CuGenDBv2

Gene ID	CSPI01G16870
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribonuclease H
Genome location	Chr1:12612975..12613949
RNA-Seq Expression	CSPI01G16870
Synteny	CSPI01G16870
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]

4.7e-134

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        MIQDSIDYVKKCE CQYHANFIHQPPEPLHPTVASW FEAWGLDLVGPITPKSSAGHSY L AT+YFSRWAEAI LREAKKENVADFIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNG++FSNSM+DKLCEKFKFKQYKSSMYN  A G   +  K     L+K+    +   +E++               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVDQD LRIGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

4.7e-134

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        MIQDSIDYVKKCE CQYHANFIHQPPEPLHPTVASW FEAWGLDLVGPITPKSSAGHSY L AT+YFSRWAEAI LREAKKENVADFIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNG++FSNSM+DKLCEKFKFKQYKSSMYN  A G   +  K     L+K+    +   +E++               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVDQD LRIGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

4.7e-134

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        MIQDSIDYVKKCE CQYHANFIHQPPEPLHPTVASW FEAWGLDLVGPITPKSSAGHSY L AT+YFSRWAEAI LREAKKENVADFIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNG++FSNSM+DKLCEKFKFKQYKSSMYN  A G   +  K     L+K+    +   +E++               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVDQD LRIGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]

4.7e-134

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        MIQDSIDYVKKCE CQYHANFIHQPPEPLHPTVASW FEAWGLDLVGPITPKSSAGHSY L AT+YFSRWAEAI LREAKKENVADFIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNG++FSNSM+DKLCEKFKFKQYKSSMYN  A G   +  K     L+K+    +   +E++               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVDQD LRIGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

XP_031742888.1 uncharacterized protein LOC116404510 [Cucumis sativus]

4.7e-134

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        MIQDSIDYVKKCE CQYHANFIHQPPEPLHPTVASW FEAWGLDLVGPITPKSSAGHSY L AT+YFSRWAEAI LREAKKENVADFIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNG++FSNSM+DKLCEKFKFKQYKSSMYN  A G   +  K     L+K+    +   +E++               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVDQD LRIGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPV8 Ribonuclease H

3.4e-130

72.87

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        M+QDS+DY KKCEACQYHANFIHQP EPLHP+VASW FEAWGLDLVGPITPKSSAGHSY L ATNYFS+WAEAIPLREAKKENV +FIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKR--CAIFLRKLSPCQRGIDK--EELVRHYGFIELLITLLQGLHLIRLFTVWRFFFP
        RI+TDNGR+FSNSMIDKLCEKFKF+QYKSSMYN  A G   +  +  C +  + +S  +R   +   E +  Y       T +    L+    V   F P
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKR--CAIFLRKLSPCQRGIDK--EELVRHYGFIELLITLLQGLHLIRLFTVWRFFFP

Query:  LEREISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVY
        LEREI SL+M VQEGLTTEDNVKLRLQELE LD+KRLEAQQ L CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRH GNKFT KWD PYIVKEVY
Subjt:  LEREISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVY

Query:  TNGAYKIVDQDELRIGPINGKFLKKFYA
        TNGAYKIVD+D L+IG INGKFLKKFYA
Subjt:  TNGAYKIVDQDELRIGPINGKFLKKFYA

A0A5A7SZF5 Integrase catalytic domain-containing protein

1.1e-125

72.62

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        M+Q S+DY KKCEACQYHANFIHQP EPLHPTVASW FEAWGLDLVGPITPKS AGHSY L AT+YFS+ AEAIPLREAKKENVA+FIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYG-QKHSTKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNGR+FS+SMIDKLCE FKFKQ KSSMYN  A    K   K     L+K+    +   +E +               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYG-QKHSTKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKL LQELEALDKKRLEAQQAL CYQ R+ K FDKHVK RSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVDQD L+IGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

A0A5A7U8J5 Ribonuclease H

1.9e-128

72.67

Show/hide

Query:  QDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPHRI
        +DS+DY KKCEACQYHANFIHQPPEPLHP VASW FEAW LDLVGPITPKSSAGHSY L AT+YFS+WAEAIPLRE KK+NVA+FIRTHIIYRYG+PHRI
Subjt:  QDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPHRI

Query:  ITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLEREIS
        +TDNGR+FSNSMIDKLCEKFKFKQYKSSMYN  A G   +  +    L K    +   D +E +                             PLEREI 
Subjt:  ITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLEREIS

Query:  SLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNGAYK
        SL+MAVQEGLT E NVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEVYTNGAYK
Subjt:  SLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNGAYK

Query:  IVDQDELRIGPINGKFLKKFYA
        IVD+D L+IGPINGKFLKKFYA
Subjt:  IVDQDELRIGPINGKFLKKFYA

A0A5D3C8N8 Ribonuclease H

1.9e-125

72.31

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        M+QDS+DY KK +A QYHANFIHQPPEP HPTVASW FEAWGLDL GPITPKSS GHSY L AT YFS+WAE IPLREAKKENVA+FIRTHIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER
        RI+TDNGR+FSNSMIDKLCEKFKFKQYKSSMYN  A G   +  K     L+K+        +E +               G+    L        PLER
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHS-TKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLER

Query:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG
        EI SL+MAVQEGLTTEDNVKLRLQELEALD+KRLEAQQAL CYQ RM K FDKHVKPRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVK VY NG
Subjt:  EISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNG

Query:  AYKIVDQDELRIGPINGKFLKKFYA
        AYKIVD+D L+IGPINGKFLKKFYA
Subjt:  AYKIVDQDELRIGPINGKFLKKFYA

A0A5D3D1E5 Ribonuclease H

2.1e-124

67.68

Show/hide

Query:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        MI DS+ + K CEACQ+HANFIHQPPEPLHPT+ASW FEAWGLDLVGPITPKS+AGHSY L  T+YFS+WAEA+PLREAKKEN+ +F++THIIYRYG+PH
Subjt:  MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKR--CAIFLRKLSPCQRGIDKE--ELVRHYGFIELLITLLQGLHLIRLFTVWRFFFP
        RI+TDNGR+F+N+++DKLCEKF FKQ+KSSMYN  A G   +  +  C++  + +S  +R   ++  E +  Y       T   G+    L        P
Subjt:  RIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKR--CAIFLRKLSPCQRGIDKE--ELVRHYGFIELLITLLQGLHLIRLFTVWRFFFP

Query:  LEREISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVY
        LEREI SL+MA+QEGLTTEDN +LRLQELEALD+KRLEAQQAL CYQ RM K FDK V+PRSFQV DLVL VRRPIITTRHTGNKFT KWD PYIVKEV+
Subjt:  LEREISSLKMAVQEGLTTEDNVKLRLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVY

Query:  TNGAYKIVDQDELRIGPINGKFLKKFYA
        TNGAYKI+DQD L+IGPINGKFLKKFYA
Subjt:  TNGAYKIVDQDELRIGPINGKFLKKFYA

SwissProt top hits

e value

%identity

Alignment

P03360 Gag-Pol polyprotein (Fragment)

3.0e-06

30.84

Show/hide

Query:  EAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPHRIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYG
        E W +D    IT K   G+ Y L   + FS W EA P +    + V   +   II R+G+P +I +DNG  F   +  +LCE           Y   + G
Subjt:  EAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPHRIITDNGRKFSNSMIDKLCEKFKFKQYKSSMYNVTAYG

Query:  QKHSTKR
        Q     R
Subjt:  QKHSTKR

Q5DTZ0 Protein NYNRIN

7.9e-07

31.4

Show/hide

Query:  IQDSI-DYVKKCEACQYHANFIH------QPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIY
        +QD + DY + C  C    N I       + P PL  T A WS  +  +++VGP+T  S  GH + L   +  +RW EA PL+      VA  +  H+  
Subjt:  IQDSI-DYVKKCEACQYHANFIH------QPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIY

Query:  RYGMPHRIITDNGRKFSNSMI
        R+G+P R+    G +F+  ++
Subjt:  RYGMPHRIITDNGRKFSNSMI

Q9P2P1 Protein NYNRIN

5.1e-06

31.3

Show/hide

Query:  DYVKKCEACQYHANFIH------QPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH
        DY + C  C    N I       + P PL  T A WS     +++VGP+T  S  GH + L   +  +RW EA PL+      VA  +  H+  R+G+P 
Subjt:  DYVKKCEACQYHANFIH------QPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPH

Query:  RIITDNGRKFSNSMI
        R+    G +F+  ++
Subjt:  RIITDNGRKFSNSMI

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATCCAAGACTCAATAGATTATGTAAAGAAGTGTGAAGCTTGTCAATACCATGCAAACTTCATACACCAACCTCCAGAGCCTCTTCATCCAACAGTGGCTTCTTGGTC
GTTCGAGGCTTGGGGACTCGATCTGGTTGGCCCCATTACACCAAAATCATCAGCAGGACATTCTTATACCCTGACAGCAACAAACTATTTTTCAAGGTGGGCTGAGGCCA
TTCCCTTGAGAGAAGCCAAGAAGGAGAACGTGGCAGACTTTATTCGAACACACATCATCTATCGATATGGTATGCCGCACCGAATCATCACAGATAATGGAAGGAAGTTC
TCCAATAGCATGATAGACAAGTTATGTGAAAAATTCAAGTTCAAGCAATACAAGTCATCCATGTACAACGTAACTGCGTATGGACAGAAGCATTCAACAAAACGTTGTGC
AATCTTTTTAAGAAAATTGTCTCCATGTCAAAGAGGGATTGACAAGGAAGAATTGGTGAGGCATTATGGGTTTATCGAACTACTCATTACACTCCTACAGGGGTTACACC
TTATTCGCTTGTTTACGGTGTGGAGGTTTTTTTTTCCTCTTGAAAGGGAAATTTCGTCGCTAAAAATGGCAGTACAAGAGGGATTGACTACGGAAGATAATGTGAAGTTA
CGTCTTCAAGAGTTAGAAGCACTTGATAAAAAGCGATTGGAGGCTCAACAAGCATTGGGATGTTATCAAGTGAGAATGTGCAAAGTTTTTGATAAGCACGTTAAACCTCG
CTCCTTTCAAGTCGATGATCTAGTACTTGTTGTAAGAAGACCGATCATCACAACAAGGCATACAGGAAATAAGTTCACACATAAATGGGATAGACCTTACATTGTTAAAG
AAGTTTATACAAATGGCGCATACAAGATCGTTGATCAAGACGAACTACGAATTGGCCCAATCAACGGTAAATTTCTTAAGAAGTTTTATGCCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MIQDSIDYVKKCEACQYHANFIHQPPEPLHPTVASWSFEAWGLDLVGPITPKSSAGHSYTLTATNYFSRWAEAIPLREAKKENVADFIRTHIIYRYGMPHRIITDNGRKF
SNSMIDKLCEKFKFKQYKSSMYNVTAYGQKHSTKRCAIFLRKLSPCQRGIDKEELVRHYGFIELLITLLQGLHLIRLFTVWRFFFPLEREISSLKMAVQEGLTTEDNVKL
RLQELEALDKKRLEAQQALGCYQVRMCKVFDKHVKPRSFQVDDLVLVVRRPIITTRHTGNKFTHKWDRPYIVKEVYTNGAYKIVDQDELRIGPINGKFLKKFYA

CSPI01G16870 (gene) of Cucumber (PI 183967) v1 genome