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CSPI01G16910 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G16910
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr1:12720332..12720927
RNA-Seq ExpressionCSPI01G16910
SyntenyCSPI01G16910
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036703.1 pol polyprotein [Cucumis melo var. makuwa]1.8e-3473.98Show/hide
Query:  MLLYLTTLNLAKFLTEDT-PILSEEKLTKKSNF-SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI----QDFKNYLKHKRKE
        MLLYLTTLNLAKFL ED  P    EKLTKKSN   VDSAKNLWTSLEKKYK +V  AKK I  KFLDYKMVD+KTV S I+++    +DFKNYLK+KRKE
Subjt:  MLLYLTTLNLAKFLTEDT-PILSEEKLTKKSNF-SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI----QDFKNYLKHKRKE

Query:  IKLEELVVQLGIKENNRKAEKCV
        IKLEELVV+LGI+ENNRKAEKC+
Subjt:  IKLEELVVQLGIKENNRKAEKCV

KAA0042920.1 pol polyprotein [Cucumis melo var. makuwa]4.6e-3057.33Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        ML YLTTLNLAKFL ED PIL E +  K+                                SVDS KNLWTSLEKKY+I+V   KK I  KFLDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTV S I+++    +DFKNYLKHKRKEIKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

TYK02905.1 pol polyprotein [Cucumis melo var. makuwa]6.1e-3057.33Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        ML YLTTLNLAKFL ED PIL E +  K+                                SVDSAKNLWTSLE KYK +V  AKK I  KFLDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTV S I+++    +DFKNYLKHKRK+IKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

TYK03675.1 pol polyprotein [Cucumis melo var. makuwa]5.9e-3361.64Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNFS-----------------------------VDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        MLLYLTTLNLAKFL ED  IL E +  K+   +                             VDSAKNLWTSLEKKYK +V  AKK    K LDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNFS-----------------------------VDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEIQDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTVISQ+QEIQDFKNYLKHKRKEIKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEIQDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

XP_008467076.1 PREDICTED: uncharacterized protein LOC103504514, partial [Cucumis melo]8.5e-3257.23Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        ML YLTTLNLAKFL ED PIL E +  K+                                SVDSAKNLWTSLE KYK +V  AKK I  KFLDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEIQ-------------DFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTVISQ+QEIQ             DFKNYLKHKRK+IKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEIQ-------------DFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

TrEMBL top hitse value%identityAlignment
A0A1S3CTZ4 uncharacterized protein LOC1035045144.1e-3257.23Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        ML YLTTLNLAKFL ED PIL E +  K+                                SVDSAKNLWTSLE KYK +V  AKK I  KFLDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEIQ-------------DFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTVISQ+QEIQ             DFKNYLKHKRK+IKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEIQ-------------DFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

A0A5A7T1C5 Pol polyprotein8.8e-3573.98Show/hide
Query:  MLLYLTTLNLAKFLTEDT-PILSEEKLTKKSNF-SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI----QDFKNYLKHKRKE
        MLLYLTTLNLAKFL ED  P    EKLTKKSN   VDSAKNLWTSLEKKYK +V  AKK I  KFLDYKMVD+KTV S I+++    +DFKNYLK+KRKE
Subjt:  MLLYLTTLNLAKFLTEDT-PILSEEKLTKKSNF-SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEI----QDFKNYLKHKRKE

Query:  IKLEELVVQLGIKENNRKAEKCV
        IKLEELVV+LGI+ENNRKAEKC+
Subjt:  IKLEELVVQLGIKENNRKAEKCV

A0A5A7THY2 Pol polyprotein2.2e-3057.33Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        ML YLTTLNLAKFL ED PIL E +  K+                                SVDS KNLWTSLEKKY+I+V   KK I  KFLDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTV S I+++    +DFKNYLKHKRKEIKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

A0A5D3BUY6 Pol polyprotein2.9e-3057.33Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        ML YLTTLNLAKFL ED PIL E +  K+                                SVDSAKNLWTSLE KYK +V  AKK I  KFLDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNF-----------------------------SVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTV S I+++    +DFKNYLKHKRK+IKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEI----QDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

A0A5D3BX52 Pol polyprotein2.8e-3361.64Show/hide
Query:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNFS-----------------------------VDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA
        MLLYLTTLNLAKFL ED  IL E +  K+   +                             VDSAKNLWTSLEKKYK +V  AKK    K LDYKMVD+
Subjt:  MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNFS-----------------------------VDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDA

Query:  KTVISQIQEIQDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV
        KTVISQ+QEIQDFKNYLKHKRKEIKLEELVV+LGI+ENNRKAEKC+
Subjt:  KTVISQIQEIQDFKNYLKHKRKEIKLEELVVQLGIKENNRKAEKCV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTTATATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGACACTCCCATTTTATCTGAGGAAAAACTGACAAAGAAAAGCAACTTTAGTGTTGATTCGGC
CAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAAATTAAAGTTGTTAGTGCAAAGAAACTTATCGCTCGAAAATTTCTAGATTACAAAATGGTAGACGCCAAAACTG
TAATCAGTCAGATTCAAGAAATTCAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAACTTGAGGAACTTGTGGTCCAACTTGGGATTAAAGAGAATAAT
CGAAAGGCGGAAAAGTGTGTCGCCACGTGCCCGAGACGACGCGGAGCGGCTGATGTCCTCAAAAGAGCTAGTTTTAAAATAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGTTATATCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGACACTCCCATTTTATCTGAGGAAAAACTGACAAAGAAAAGCAACTTTAGTGTTGATTCGGC
CAAAAATCTATGGACTTCATTAGAGAAGAAGTACAAAATTAAAGTTGTTAGTGCAAAGAAACTTATCGCTCGAAAATTTCTAGATTACAAAATGGTAGACGCCAAAACTG
TAATCAGTCAGATTCAAGAAATTCAGGACTTCAAAAATTATCTCAAGCATAAACGCAAAGAGATAAAACTTGAGGAACTTGTGGTCCAACTTGGGATTAAAGAGAATAAT
CGAAAGGCGGAAAAGTGTGTCGCCACGTGCCCGAGACGACGCGGAGCGGCTGATGTCCTCAAAAGAGCTAGTTTTAAAATAAAATAG
Protein sequenceShow/hide protein sequence
MLLYLTTLNLAKFLTEDTPILSEEKLTKKSNFSVDSAKNLWTSLEKKYKIKVVSAKKLIARKFLDYKMVDAKTVISQIQEIQDFKNYLKHKRKEIKLEELVVQLGIKENN
RKAEKCVATCPRRRGAADVLKRASFKIK