CuGenDBv2

Gene ID	CSPI01G17230
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	BED-type domain-containing protein
Genome location	Chr1:12975563..12975868
RNA-Seq Expression	CSPI01G17230
Synteny	CSPI01G17230
Gene Ontology terms	GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033242.1 hypothetical protein E6C27_scaffold845G00360 [Cucumis melo var. makuwa]

3.9e-34

73.47

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KD AWKY RLQN++D+NT +YGFC K TKGGV+R+KQHLVGGYR  TA RKC DH KEEIK YMSKKK+IKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

KAA0053508.1 uncharacterized protein E6C27_scaffold190G00650 [Cucumis melo var. makuwa]

2.3e-34

73.47

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KDLAWKY RLQN++D+NT +YGFC K TKGGV+R+KQHLVGGYR A A +KC DH KEEI+ YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

KAA0062939.1 hypothetical protein E6C27_scaffold468G00330 [Cucumis melo var. makuwa]

2.3e-34

75.51

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA +SS+KDLAWKY RLQN++D+NT + GFC K TKGGV+R+KQHLVGGYR ATA RKC DH KEEIK YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

TYK16403.1 uncharacterized protein E5676_scaffold21G001980 [Cucumis melo var. makuwa]

1.3e-34

75.51

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KDLAWKY RLQN++D+NT + GFC K TKGGV+R+KQHLVGGYR ATA RKC DH KEEIK YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

XP_008460318.1 PREDICTED: uncharacterized protein LOC103499176 [Cucumis melo]

2.3e-34

73.47

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KDLAWKY RLQN++D+NT +YGFC K TKGGV+R+KQHLVGGYR A A +KC DH KEEI+ YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CC76 uncharacterized protein LOC103499176

1.1e-34

73.47

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KDLAWKY RLQN++D+NT +YGFC K TKGGV+R+KQHLVGGYR A A +KC DH KEEI+ YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

A0A5A7SPX6 Uncharacterized protein

1.9e-34

73.47

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KD AWKY RLQN++D+NT +YGFC K TKGGV+R+KQHLVGGYR  TA RKC DH KEEIK YMSKKK+IKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

A0A5A7UEN1 DUF659 domain-containing protein

1.1e-34

73.47

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KDLAWKY RLQN++D+NT +YGFC K TKGGV+R+KQHLVGGYR A A +KC DH KEEI+ YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

A0A5A7VBF9 BED-type domain-containing protein

1.1e-34

75.51

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA +SS+KDLAWKY RLQN++D+NT + GFC K TKGGV+R+KQHLVGGYR ATA RKC DH KEEIK YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

A0A5D3CWZ2 BED-type domain-containing protein

6.5e-35

75.51

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Query:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED
        MA++SS+KDLAWKY RLQN++D+NT + GFC K TKGGV+R+KQHLVGGYR ATA RKC DH KEEIK YMSKKKEIKEQRNLIVDID + YG E ED
Subjt:  MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYED

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G36095.1 DNA binding

3.4e-04

46.94

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Query:  FCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIK
        +C K T GGV   KQH++GG+R  T         +EEIK  M KK EIK
Subjt:  FCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIK

Sequences

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CDS sequence

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ATGGCTGAGGACAGTTCAAGAAAAGATCTAGCATGGAAATATGCTCGATTGCAAAATGAGCGAGATGTTAATACGTTATTGTATGGTTTTTGTTTAAAAGCAACTAAAGG
AGGAGTTTTTAGAATGAAACAACATCTCGTTGGTGGTTATAGAAAGGCCACAGCTGGTAGAAAATGCCTTGATCACGCGAAGGAAGAAATTAAAGCTTATATGTCCAAGA
AAAAGGAGATTAAAGAGCAAAGAAATTTGATTGTTGATATTGATGCAAAGACTTATGGTTTTGAATATGAAGATAACGATGTGTAA

mRNA sequence

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Protein sequence

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MAEDSSRKDLAWKYARLQNERDVNTLLYGFCLKATKGGVFRMKQHLVGGYRKATAGRKCLDHAKEEIKAYMSKKKEIKEQRNLIVDIDAKTYGFEYEDNDV

CSPI01G17230 (gene) of Cucumber (PI 183967) v1 genome