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CSPI01G17840 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G17840
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
Genome locationChr1:13386014..13386451
RNA-Seq ExpressionCSPI01G17840
SyntenyCSPI01G17840
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035099.1 hypothetical protein E6C27_scaffold57G001740 [Cucumis melo var. makuwa]1.0e-4078.68Show/hide
Query:  MADLKPLHVLLIIAP-LLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKR
        MAD KPLHVLLI+AP LL+LASQLN IFA TDS TP NLPQQT N +E LPSSDPHLSPPLSNQRAARNN TKAH   +LAGT++SLKRLRS+RDSIRKR
Subjt:  MADLKPLHVLLIIAP-LLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKR

Query:  RRRNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSI
        RRRNH RAW  R+YSS GC  TVSL YIWFGI WSI
Subjt:  RRRNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSI
TrEMBL top hitse value%identityAlignment
A0A0A0LTC2 Uncharacterized protein4.3e-72100Show/hide
Query:  MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRR
        MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRR
Subjt:  MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRR

Query:  RNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSILHNLIYFNSPR
        RNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSILHNLIYFNSPR
Subjt:  RNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSILHNLIYFNSPR
A0A5D3BAD8 Uncharacterized protein5.1e-4178.68Show/hide
Query:  MADLKPLHVLLIIAP-LLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKR
        MAD KPLHVLLI+AP LL+LASQLN IFA TDS TP NLPQQT N +E LPSSDPHLSPPLSNQRAARNN TKAH   +LAGT++SLKRLRS+RDSIRKR
Subjt:  MADLKPLHVLLIIAP-LLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPH-ELAGTKISLKRLRSSRDSIRKR

Query:  RRRNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSI
        RRRNH RAW  R+YSS GC  TVSL YIWFGI WSI
Subjt:  RRRNHQRAWRRRNYSSHGCRLTVSLSYIWFGIFWSI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAA
TCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGC
ATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGC
AACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGATCTTAAACCCCTCCATGTTCTCTTAATAATTGCGCCTCTTCTTATTCTGGCCTCGCAACTCAACTTGATTTTCGCTCATACAGATTCGTCAACTCCTTCCAA
TCTTCCCCAACAAACAACCAACGAAGAAGAACACCTCCCTTCCTCCGATCCACATCTTTCTCCACCTCTTAGCAACCAAAGAGCTGCTCGAAACAATAAGACCAAAGCGC
ATCCTCATGAGCTCGCTGGTACTAAAATCTCTCTCAAACGCTTGAGATCTAGCCGTGATTCGATTAGGAAACGTCGAAGACGCAATCACCAACGTGCTTGGCGTCGTCGC
AACTATTCCTCCCATGGTTGTCGTCTAACGGTTTCTTTGTCGTACATTTGGTTCGGAATTTTTTGGTCCATTCTGCATAATCTAATTTATTTTAACTCACCTCGATGA
Protein sequenceShow/hide protein sequence
MADLKPLHVLLIIAPLLILASQLNLIFAHTDSSTPSNLPQQTTNEEEHLPSSDPHLSPPLSNQRAARNNKTKAHPHELAGTKISLKRLRSSRDSIRKRRRRNHQRAWRRR
NYSSHGCRLTVSLSYIWFGIFWSILHNLIYFNSPR