; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G17980 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G17980
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L35
Genome locationChr1:13460359..13462762
RNA-Seq ExpressionCSPI01G17980
SyntenyCSPI01G17980
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001706 - Ribosomal protein L35, non-mitochondrial
IPR018265 - Ribosomal protein L35, conserved site
IPR021137 - Ribosomal protein L35
IPR037229 - Ribosomal protein L35 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035109.1 50S ribosomal protein L35 [Cucumis melo var. makuwa]5.7e-6694.48Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQK SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLK
        IVRRRAGKQHLL KKNAKRRLRLSK+HPVSRSDYDNVIGALPYLK
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLK

XP_004146668.1 50S ribosomal protein L35, chloroplastic [Cucumis sativus]5.2e-75100Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

XP_008443834.1 PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]1.3e-7095.36Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQKPSHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        IVRRRAGKQHLL KKNAKRRLRLSK+HPVSRSDYDNVIGALPYLKVNRQAQ
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

XP_022135558.1 50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]5.8e-5883.55Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIA-SVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRG
        MASAS  VSFGLRFSPLCSRPS RVSH SV +A S NKVNSL+L SS NISGFG   LQK  HI+PTSQ+ TP TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIA-SVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        KIVRRRAGKQHLL KKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

XP_038878434.1 50S ribosomal protein L35, chloroplastic [Benincasa hispida]1.6e-6389.4Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVS GLRFSPL SRPS RVSH+SVG+AS NK NSLKLSSS+NISGFG   LQKPSHISPT QI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        IVRRRAGKQHLL KKN KRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

TrEMBL top hitse value%identityAlignment
A0A0A0LYX0 50S ribosomal protein L352.5e-75100Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

A0A1S3B9R8 50S ribosomal protein L356.4e-7195.36Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQKPSHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        IVRRRAGKQHLL KKNAKRRLRLSK+HPVSRSDYDNVIGALPYLKVNRQAQ
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

A0A5D3B7R7 50S ribosomal protein L352.8e-6694.48Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQK SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLK
        IVRRRAGKQHLL KKNAKRRLRLSK+HPVSRSDYDNVIGALPYLK
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLK

A0A6J1C550 50S ribosomal protein L352.8e-5883.55Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIA-SVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRG
        MASAS  VSFGLRFSPLCSRPS RVSH SV +A S NKVNSL+L SS NISGFG   LQK  HI+PTSQ+ TP TV AAKGYKMKTHKASAKRFRVTGRG
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIA-SVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRG

Query:  KIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        KIVRRRAGKQHLL KKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  KIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

A0A6J1JDG6 50S ribosomal protein L351.4e-5781.46Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK
        MASAS +VSFGLRFSPLCSR S RVS  SV + S NK  SL+LSSSHN+S FG   LQKP HI+P+S+I TPFTV AAKGYKMKTHKASAKRFRVTGRGK
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGK

Query:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
        IVRRRAGKQHLL KKN KR+LRLSKMHPVSRSDYDNVIGALPYLKVNRQA+
Subjt:  IVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ

SwissProt top hitse value%identityAlignment
P23326 50S ribosomal protein L35, chloroplastic2.8e-3156.88Show/hide
Query:  MASASMAVSF---GLRFSPLCSRPSFRVSHT-SVGIASVNK--VNSLKLSSSHNISGFGFNSL----QKPSHISPTSQIRTP-FTVFAAKGYKMKTHKAS
        MASA+  +SF    L  SP    PS R S    + +   NK   ++L LSSS +IS      +    ++ S +  +    +P FTVFAAKGYKMKTHKAS
Subjt:  MASASMAVSF---GLRFSPLCSRPSFRVSHT-SVGIASVNK--VNSLKLSSSHNISGFGFNSL----QKPSHISPTSQIRTP-FTVFAAKGYKMKTHKAS

Query:  AKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ
        AKRFRVTG+GKIVRRRAGKQHLL KKN KR+ RLSK+  V RSDYDNVIGALPYLKVNR+
Subjt:  AKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQ

Q31NR1 50S ribosomal protein L353.9e-0954.84Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPY
        K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   LPY
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPY

Q5N5F4 50S ribosomal protein L353.9e-0954.84Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPY
        K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+   V  +D + V   LPY
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPY

Q8VZ55 50S ribosomal protein L35, chloroplastic7.9e-3463.16Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVS-HTSVGIASVNKVNSLKLSSSHNISGF-GFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGR
        MAS SMA S  + F       S +VS  +SV  A+        LSSSH+ISG      L+  +  SP SQ    FTVFA KGYKMKTHKASAKRFRVTGR
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVS-HTSVGIASVNKVNSLKLSSSHNISGF-GFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        GKIVRRR+GKQHLL KKN KR+LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  GKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA

Q8YRL9 50S ribosomal protein L353.9e-0955.56Show/hide
Query:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYL
        K+KT KA+AKRFR TG GKIVRR+A K HLL  K   ++ + SKM  V+  D +NV   LPYL
Subjt:  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYL

Arabidopsis top hitse value%identityAlignment
AT2G24090.1 Ribosomal protein L355.6e-3563.16Show/hide
Query:  MASASMAVSFGLRFSPLCSRPSFRVS-HTSVGIASVNKVNSLKLSSSHNISGF-GFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGR
        MAS SMA S  + F       S +VS  +SV  A+        LSSSH+ISG      L+  +  SP SQ    FTVFA KGYKMKTHKASAKRFRVTGR
Subjt:  MASASMAVSFGLRFSPLCSRPSFRVS-HTSVGIASVNKVNSLKLSSSHNISGF-GFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGR

Query:  GKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA
        GKIVRRR+GKQHLL KKN KR+LRLSKM  V+RSDYDNVIGALPYLKVNR+A
Subjt:  GKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAA
GGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCA
CTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCAT
TTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAA
TAGGCAGGCCCAGTAG
mRNA sequenceShow/hide mRNA sequence
TAAAAATATATTTTTTGTTTTATTATTATCTTTTTAAAATTAAGAAATCGATAAATGAAATAAAATCGCTTCACTTTATCCGAACAGCAGGCCAAGTCTGAGGCTCGTAG
AGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCC
ATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTC
AGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGA
GTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCG
GAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCA
AATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTC
AGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGG
TTTGTTTTCTTAGTTTCGTCTCATATCATATTCATGAATATAGTAATGGAG
Protein sequenceShow/hide protein sequence
MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQH
LLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ