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CSPI01G17990 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G17990
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationChr1:13464774..13465835
RNA-Seq ExpressionCSPI01G17990
SyntenyCSPI01G17990
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]6.5e-63100Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
        MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL

Query:  KIGALLVVPFCVFLVFSFSKYDSDSS
        KIGALLVVPFCVFLVFSFSKYDSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKYDSDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]2.9e-5591.47Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLN---NNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDSSFIFIG S VPHPLLN   NNNGRKFGITSAKRTQ  DSDS SSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSSFIFIGFSPVPHPLLN---NNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS
        +LLKIGA LVVPFCVFLVFSFSK+DSDSS
Subjt:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]1.7e-4278.74Show/hide
Query:  MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHP LL+NNN RKFG TSAKRT   DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]1.8e-4479.53Show/hide
Query:  MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DS+FIF G S +PHP LL+NNN RKFG TSAKRT DSDSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

XP_038879768.1 uncharacterized protein LOC120071517 [Benincasa hispida]3.8e-4782.54Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
        MAMV+SSFIFIG S VP+PL NNN+ RKF ITSAK T+DSDSDS SS    Q KFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKE+E+LL
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL

Query:  KIGALLVVPFCVFLVFSFSKYDSDSS
        KIGA LVVPFCVFLVFSFS+ DSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKYDSDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein3.1e-63100Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
        MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL
Subjt:  MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLL

Query:  KIGALLVVPFCVFLVFSFSKYDSDSS
        KIGALLVVPFCVFLVFSFSKYDSDSS
Subjt:  KIGALLVVPFCVFLVFSFSKYDSDSS

A0A1S3B903 uncharacterized protein LOC1034873291.4e-5591.47Show/hide
Query:  MAMVDSSFIFIGFSPVPHPLLN---NNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
        MAMVDSSFIFIG S VPHPLLN   NNNGRKFGITSAKRTQ  DSDS SSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE
Subjt:  MAMVDSSFIFIGFSPVPHPLLN---NNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETE

Query:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS
        +LLKIGA LVVPFCVFLVFSFSK+DSDSS
Subjt:  DLLKIGALLVVPFCVFLVFSFSKYDSDSS

A0A6J1C0R6 uncharacterized protein LOC1110073011.6e-3570.16Show/hide
Query:  MVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKI
        M DS+FIF G S V   L N NN R F    AKRT   DS +  S Q NQF+FPSLRV NPL+AR VVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKI
Subjt:  MVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKI

Query:  GALLVVPFCVFLVFSFSKYDSDSS
        GA LVVPFCVFL+ SF+K  +DSS
Subjt:  GALLVVPFCVFLVFSFSKYDSDSS

A0A6J1EZT4 uncharacterized protein LOC1114408618.0e-4378.74Show/hide
Query:  MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHP LL+NNN RKFG TSAKRT   DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MAMVDSSFIFIGFSPVPHP-LLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

A0A6J1KT82 uncharacterized protein LOC1114980161.1e-4278.74Show/hide
Query:  MAMVDSSFIFIGFSPVPHPL-LNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHPL L+NNN RKFG TSAKRT   DSDS SST   Q KFPSLRVSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETED 
Subjt:  MAMVDSSFIFIGFSPVPHPL-LNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGALLVVPFCVFLVFSFSKYDSDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGALLVVPFCVFLVFSFSKYDSDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein3.8e-2147.01Show/hide
Query:  FIGFSPVPHPLLNNNNGRKF--GITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLV
        F+ F P      N+N  R F  G+T   + +D  S+ ++  +P       ++V N ++ARS ++VL LGF+DAGYSGDWSRIG I+KETE+LLKI A LV
Subjt:  FIGFSPVPHPLLNNNNGRKF--GITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLV

Query:  VPFCVFLVFSFSKYDSD
        VP C+FL  SFS   +D
Subjt:  VPFCVFLVFSFSKYDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATGGTAGATTCAAGTTTTATCTTCATCGGTTTCTCCCCCGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTAC
ACAAGACTCCGATTCCGATTCCGCTTCTTCAACCCAACCAAATCAATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCG
GATTAGGGTTCGTCGATGCAGGGTATAGCGGAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTT
TGTGTATTTCTCGTATTTTCTTTCTCAAAATATGATTCGGATTCTTCGTAA
mRNA sequenceShow/hide mRNA sequence
GAAGTTAGCAAGAGAGTTTGTTAAGAGTGAAAAATCTAAAATGATAAAACTGCTTAAGAGAAGAGAAGTTAGAGAAAGAAAGCTTTTCGTGCTGTTTAAATTTTAGTGCA
TATTTTGTAAATATTTTCTTCTTTCTGTTTACCATAATTCCTCAATCTGTAATTCCCTTAAAAATTTAATGGTAGAATTCGTACCCCCCCCACTTGTTCTCTGTTTCTAA
TGGAAAAAGGATGCGGCCGTAATTCATTTCCACAGGCATTCATTTCAGATTTTCCATAACTGTCTTAACTTCAATTGGCAATGGCGATGGTAGATTCAAGTTTTATCTTC
ATCGGTTTCTCCCCCGTACCTCATCCCCTTTTGAACAACAATAATGGCAGAAAATTCGGAATCACGTCGGCAAAACGTACACAAGACTCCGATTCCGATTCCGCTTCTTC
AACCCAACCAAATCAATTCAAATTTCCATCTCTGAGAGTATCAAATCCACTTCTAGCCCGATCTGTCGTTTCGGTCCTCGGATTAGGGTTCGTCGATGCAGGGTATAGCG
GAGATTGGTCTAGAATTGGAGCGATTACGAAGGAAACTGAAGATTTGCTTAAGATTGGAGCTTTGTTGGTTGTTCCGTTTTGTGTATTTCTCGTATTTTCTTTCTCAAAA
TATGATTCGGATTCTTCGTAAGTGTATGGATGATGGATTCCCCAAAATGGTTAGAAATAATTTCAATTTGAAAATGGTAGCTAAGCCAAAGTTGCTTTTTTTGGTTAGAA
GGGAGATTTTGAAGAACATGTACAAAATTCATTTACTGATATGCACATGGTTCTTGTTGGTTTCCACTCTCATGTTTTAGAATTTAGTAAGCGTCACACTGTTTAGAAAT
AGTCATATTCGAACAAGAAATGATATCTAGGTGCATACATTCACTTTAGTAGCTTATTGGCTAAAGTCACTATGCGAATA
Protein sequenceShow/hide protein sequence
MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPSLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPF
CVFLVFSFSKYDSDSS