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CSPI01G18450 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G18450
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr1:13871129..13871344
RNA-Seq ExpressionCSPI01G18450
SyntenyCSPI01G18450
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016702 - oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]6.3e-2381.69Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        FS V E YND DWNSLSDD K TSGYIFNIAGG VAWK KKQTILAQS M+SEMIALAT+S+EASWL+SLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

KAE9584075.1 putative RNA-directed DNA polymerase [Lupinus albus]1.1e-2280.28Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

KAE9598987.1 putative RNA-directed DNA polymerase [Lupinus albus]1.1e-2280.28Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

RZC29738.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Glycine soja]4.4e-2483.1Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        FS V E YNDADWN+LSDD K TSGYIF+IAGGA++WK KKQTILAQSTM+SEMIALAT+SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

TYJ98069.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.3e-2383.1Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        F  V E Y+DADWNSLSDD K TSGYIFNI GGAVAWK KKQTILAQSTM+SEMIALA +SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

TrEMBL top hitse value%identityAlignment
A0A445M2H4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.1e-2483.1Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        FS V E YNDADWN+LSDD K TSGYIF+IAGGA++WK KKQTILAQSTM+SEMIALAT+SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

A0A5D3BGA0 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-2383.1Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        F  V E Y+DADWNSLSDD K TSGYIFNI GGAVAWK KKQTILAQSTM+SEMIALA +SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

A0A5D3DJH9 Putative polyprotein3.1e-2381.69Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        FS V E YND DWNSLSDD K TSGYIFNIAGG VAWK KKQTILAQS M+SEMIALAT+S+EASWL+SLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

A0A6A4MUS8 Putative RNA-directed DNA polymerase5.2e-2380.28Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

A0A6A4PET0 Putative RNA-directed DNA polymerase5.2e-2380.28Show/hide
Query:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        F  V E Y+DADWN+LSDD K TSGYIF+IAGGAV+WK KKQTILAQSTM++EMIALAT+SEEASWLRSLL
Subjt:  FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1612.1e-0843.33Show/hide
Query:  YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWL
        Y+DADW    +  + TSGY+F + GG V+W+ KKQ  +A S+ + E +AL+ +++EA WL
Subjt:  YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.6e-0736.76Show/hide
Query:  VFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        + + Y DAD     D+ K ++GY+F  +GGA++W+ K Q  +A ST ++E IA   + +E  WL+  L
Subjt:  VFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-0537.5Show/hide
Query:  YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        Y+DADW    DD   T+GYI  +    ++W  KKQ  + +S+ ++E  ++A +S E  W+ SLL
Subjt:  YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.6e-0637.5Show/hide
Query:  YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL
        Y+DADW   +DD   T+GYI  +    ++W  KKQ  + +S+ ++E  ++A +S E  W+ SLL
Subjt:  YNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TTTTCCGTTGTATTTGAAAATTACAATGATGCTGATTGGAACTCCCTCTCAGATGATTTAAAGGTTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTG
GAAATTCAAGAAACAGACCATCTTGGCCCAGTCAACGATGAAGTCTGAAATGATTGCACTAGCTACTTCTAGTGAAGAAGCAAGTTGGCTTCGAAGCTTGCTATAA
mRNA sequenceShow/hide mRNA sequence
TTTTCCGTTGTATTTGAAAATTACAATGATGCTGATTGGAACTCCCTCTCAGATGATTTAAAGGTTACAAGTGGCTATATTTTTAATATAGCAGGAGGAGCTGTTGCTTG
GAAATTCAAGAAACAGACCATCTTGGCCCAGTCAACGATGAAGTCTGAAATGATTGCACTAGCTACTTCTAGTGAAGAAGCAAGTTGGCTTCGAAGCTTGCTATAA
Protein sequenceShow/hide protein sequence
FSVVFENYNDADWNSLSDDLKVTSGYIFNIAGGAVAWKFKKQTILAQSTMKSEMIALATSSEEASWLRSLL