CuGenDBv2

Gene ID	CSPI01G18630
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	Chr1:14037006..14038468
RNA-Seq Expression	CSPI01G18630
Synteny	CSPI01G18630
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0041601.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-205

75.1

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Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

TYK04714.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-205

75.1

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Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

TYK15021.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.5e-205

74.9

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Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI T DITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAF++AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SDVVLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KP++SS  A    D+ST+    ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LGLTVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

TYK19656.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-205

75.1

Show/hide

Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

TYK26360.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-205

75.1

Show/hide

Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7VIT8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.2e-206

75.1

Show/hide

Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

A0A5D3C0D7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.2e-206

75.1

Show/hide

Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

A0A5D3CT53 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-205

74.9

Show/hide

Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI T DITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAF++AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SDVVLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KP++SS  A    D+ST+    ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LGLTVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

A0A5D3D7V8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.2e-206

75.1

Show/hide

Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

A0A5D3DT06 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.2e-206

75.1

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Query:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL
        MEK  I RPIST+LDG+NY+TWANQMKSFLIGRKLWRI TGDITKPTKQDKEDDSKFI+RLEEWDSKNHQIITWL NTSIP IH Q+DAFE+AK LW+FL
Subjt:  MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFL

Query:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN
        STRFKSVGLAHYYQLH++LVNLNQ+ GQSVNE+LAVLQPIWTQLDQA ISKDHL LIKVLMGLRP YE VRAALLH +PLPSLDA IQEILFEE+  GIN
Subjt:  STRFKSVGLAHYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGIN

Query:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS
         SK SD VLAS YS  G  +TFCKNCKL+GHKF +CPKIE                             NF+KPS+SS  A    D ST     ISDLQS
Subjt:  SSKQSDVVLASAYSLNGTPNTFCKNCKLSGHKFSDCPKIE-----------------------------NFSKPSSSSVVAATTSDDSTSTNPHISDLQS

Query:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS
        LLNQL+SS SSAL VSPGN+WLLD  CCNHMTSD+SLM + SP KSLPPIYAADGNCMNI+H+GTI+TPSL+L HTYCVPNLTFNLVSVGQLC+LG TVS
Subjt:  LLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVS

Query:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN
        FS NGCQVQD QTGQ IGTGRKVGRLFEL+SLQ+P P SIS  V ++DTYQWHL  GHAS EKLRHLISINNLN++TKFVPF+CLN
Subjt:  FSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNLNNVTKFVPFHCLN

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

7.4e-19

24.43

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Query:  TVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFID-RLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFLSTRFKSVGLA
        T L  TNYL W+ Q+ +   G +L     G  T P      D +  ++     W  ++  I + +      ++         A  +W+ L   + +    
Subjt:  TVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFID-RLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFLSTRFKSVGLA

Query:  HYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLI-KVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGINSSKQSDVVL
        H  QL + L    +   +++++++  L   + QL       DH   + +VL  L   Y+ V   +   +  P+L    + +L  E      SS     + 
Subjt:  HYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLI-KVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGINSSKQSDVVL

Query:  ASAYSLNGTPNTFCKNCKLSGHKFSDCPKIENFSKPSSSSVVAATTSDDSTSTNPHISDLQ------------SLLNQLLSSSSSALVVSP---------
        A+A S   T  T   N     +++ D     N SKP   S  +     ++  + P++   Q            S L   LSS +S    SP         
Subjt:  ASAYSLNGTPNTFCKNCKLSGHKFSDCPKIENFSKPSSSSVVAATTSDDSTSTNPHISDLQ------------SLLNQLLSSSSSALVVSP---------

Query:  --------GNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIG--TIDTPS--LSLSHTYCVPNLTFNLVSVGQLCEL-GLTVSFSLN
                 N WLLD    +H+TSDF+ ++   P      +  ADG+ + ISH G  ++ T S  L+L +   VPN+  NL+SV +LC   G++V F   
Subjt:  --------GNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIG--TIDTPS--LSLSHTYCVPNLTFNLVSVGQLCEL-GLTVSFSLN

Query:  GCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLI---SINNLNNVTKFV
          QV+D  TG  +  G+    L+E       P S  +    +A    WH   GH +   L  +I   S++ LN   KF+
Subjt:  GCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLI---SINNLNNVTKFV

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.1e-17

23.13

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Query:  TVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFID-RLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFLS---------
        T L  TNYL W+ Q+ +   G +L     G    P      D    ++     W  ++  I + +      ++         A  +W+ L          
Subjt:  TVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFID-RLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFLS---------

Query:  --------TRFKSVGLA-----HYYQLHSTLVNLNQDVGQSVNEFLAV-LQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATI
                TRF  + L      H  Q+   L NL  D    +++  A    P  T++ +  I+++   L      + P        + H N   + +   
Subjt:  --------TRFKSVGLA-----HYYQLHSTLVNLNQDVGQSVNEFLAV-LQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATI

Query:  QEILFEEKHHGINSSKQSDVVLASAYSL--NGTPNTF---CKNCKLSGHKFSDCPKIENFSKPSSSSVVAATTSDDSTSTNPHISDLQSLLNQLLSSSSS
        Q    + +++  N+++ +    +S+ S   N  P  +   C+ C + GH    CP++  F           +T++   ST+P  +  Q   N  ++S  +
Subjt:  QEILFEEKHHGINSSKQSDVVLASAYSL--NGTPNTF---CKNCKLSGHKFSDCPKIENFSKPSSSSVVAATTSDDSTSTNPHISDLQSLLNQLLSSSSS

Query:  ALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTP----SLSLSHTYCVPNLTFNLVSVGQLCELG-LTVSFSLNGC
        A      N WLLD    +H+TSDF+ ++   P      +  ADG+ + I+H G+   P    SL L+    VPN+  NL+SV +LC    ++V F     
Subjt:  ALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMNISHIGTIDTP----SLSLSHTYCVPNLTFNLVSVGQLCELG-LTVSFSLNGC

Query:  QVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNL
        QV+D  TG  +  G+    L+E         S  +    +A    WH   GH S   L  +IS ++L
Subjt:  QVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLISINNL

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAAAAAGATCATATTTTTAGACCCATTAGCACAGTACTAGATGGGACCAATTACCTCACTTGGGCCAATCAAATGAAAAGCTTCTTAATTGGCAGAAAATTATGGCG
CATCAGCACTGGAGATATTACCAAACCAACCAAACAAGACAAAGAAGATGATAGTAAATTTATTGATCGACTCGAAGAATGGGACAGTAAAAATCACCAGATTATCACAT
GGCTTGGTAACACATCTATCCCTACTATTCATGCGCAATATGATGCCTTTGAAGATGCTAAAACATTGTGGGATTTTTTATCTACACGATTTAAATCTGTTGGTTTAGCT
CATTATTATCAATTGCACAGTACTCTTGTTAATCTTAATCAAGATGTTGGACAGTCCGTTAATGAATTTCTGGCAGTTCTTCAACCTATATGGACTCAGCTAGATCAAGC
AAAAATTAGTAAAGATCATCTTCACCTTATTAAGGTCCTTATGGGATTACGCCCAGGATATGAATTTGTTAGGGCTGCACTACTACACCACAATCCCTTGCCCTCACTGG
ATGCTACAATTCAAGAAATTTTATTTGAGGAAAAACATCATGGCATCAATTCCTCCAAACAGTCTGATGTTGTTCTTGCCAGCGCCTATTCACTCAATGGAACGCCGAAC
ACATTTTGTAAGAATTGTAAGCTCTCTGGTCACAAATTTTCTGATTGTCCTAAAATAGAGAACTTTAGTAAACCTAGTTCCTCCTCTGTTGTTGCTGCTACTACCTCAGA
TGATTCCACCTCCACCAATCCTCATATAAGTGACCTTCAGAGCCTACTAAATCAATTACTTTCGTCATCTTCCTCTGCTCTTGTTGTTTCACCAGGTAATAAATGGCTTC
TTGACATTGCCTGTTGCAATCATATGACATCTGATTTTTCACTTATGACTTCTTCTAGTCCAGCTAAATCCTTACCTCCAATTTATGCTGCTGATGGAAACTGTATGAAC
ATCTCCCACATTGGCACCATTGATACTCCTAGCCTAAGTCTTTCCCATACTTATTGTGTTCCAAACCTAACCTTTAATCTTGTGTCTGTGGGACAATTGTGTGAACTCGG
CCTAACTGTGTCTTTTTCTCTGAATGGTTGTCAGGTTCAAGATTCGCAAACGGGACAGATAATTGGCACGGGTCGCAAAGTGGGAAGATTATTTGAACTCATATCCCTCC
AACTTCCTCCTCCTTCATCTATCTCGGTATCTGTCATTGAAGCTGATACATATCAGTGGCATCTTTATTTTGGTCATGCTTCTTCTGAAAAACTTCGTCATTTAATTTCC
ATTAATAACTTGAATAATGTTACTAAGTTTGTTCCTTTTCATTGCTTAAATTGA

mRNA sequence

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Protein sequence

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MEKDHIFRPISTVLDGTNYLTWANQMKSFLIGRKLWRISTGDITKPTKQDKEDDSKFIDRLEEWDSKNHQIITWLGNTSIPTIHAQYDAFEDAKTLWDFLSTRFKSVGLA
HYYQLHSTLVNLNQDVGQSVNEFLAVLQPIWTQLDQAKISKDHLHLIKVLMGLRPGYEFVRAALLHHNPLPSLDATIQEILFEEKHHGINSSKQSDVVLASAYSLNGTPN
TFCKNCKLSGHKFSDCPKIENFSKPSSSSVVAATTSDDSTSTNPHISDLQSLLNQLLSSSSSALVVSPGNKWLLDIACCNHMTSDFSLMTSSSPAKSLPPIYAADGNCMN
ISHIGTIDTPSLSLSHTYCVPNLTFNLVSVGQLCELGLTVSFSLNGCQVQDSQTGQIIGTGRKVGRLFELISLQLPPPSSISVSVIEADTYQWHLYFGHASSEKLRHLIS
INNLNNVTKFVPFHCLN

CSPI01G18630 (gene) of Cucumber (PI 183967) v1 genome