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CSPI01G18730 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G18730
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr1:14155651..14156237
RNA-Seq ExpressionCSPI01G18730
SyntenyCSPI01G18730
Gene Ontology termsGO:0009451 - RNA modification (biological process)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653088.1 hypothetical protein Csa_020070 [Cucumis sativus]1.8e-5899.14Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVFIELPY EIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQR
        LLDMYAKRGSIQESQR
Subjt:  LLDMYAKRGSIQESQR

TYK26926.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.1e-5593.28Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPY EIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

XP_004150024.3 pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis sativus]4.1e-5594.12Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVFIELPY EIISWNALISGYAQNALCQEALEAFLYA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLN DPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

XP_008444010.1 PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Cucumis melo]4.1e-5593.28Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPY EIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

XP_038878735.1 pentatricopeptide repeat-containing protein At4g32430, mitochondrial isoform X1 [Benincasa hispida]1.4e-5088.24Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFE MQDASRVF+ELPY EIISWNALISGYAQN LCQEALE FL A+ME KPNEYTFGSVLNAISAG E I +KHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

TrEMBL top hitse value%identityAlignment
A0A0A0LWF3 Uncharacterized protein2.0e-5594.12Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVFIELPY EIISWNALISGYAQNALCQEALEAFLYA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLN DPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

A0A1S3BA52 pentatricopeptide repeat-containing protein At4g32430, mitochondrial2.0e-5593.28Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPY EIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

A0A5A7TTA5 Pentatricopeptide repeat-containing protein2.0e-5593.28Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPY EIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

A0A5D3DTC6 Pentatricopeptide repeat-containing protein2.0e-5593.28Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFEFMQDASRVF+ELPY EIISWNALISGYAQNALCQEALEAF YA+MEYKPNEYTFGSVLNAISAG EDI LKHGQRCHSHLIKVGLNFDPIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

A0A6J1EK48 pentatricopeptide repeat-containing protein At4g32430, mitochondrial9.5e-5087.39Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        MYAKFE MQDASRVF+ELPY EIISWNALISGYAQN LCQEALE FL A+ME KPNEYTFGSVLNAIS G EDI LKHGQRCHSHLIKVGLN  PIISGA
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRGSIQESQR  N
Subjt:  LLDMYAKRGSIQESQRSIN

SwissProt top hitse value%identityAlignment
O81767 Pentatricopeptide repeat-containing protein At4g339901.6e-1439.83Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYK----PNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPI
        MYAK   +  A  VF  LP  ++ISWN +ISGYAQN    EA+E  +Y +ME +     N+ T+ SVL A S       L+ G + H  L+K GL  D  
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYK----PNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPI

Query:  ISGALLDMYAKRGSIQES
        +  +L DMY K G ++++
Subjt:  ISGALLDMYAKRGSIQES

Q683I9 Pentatricopeptide repeat-containing protein At3g628904.0e-1333.87Show/hide
Query:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVME------YKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDP
        YAK   + DA ++F E+P   +ISW+ LI+GY      +EAL+ F    +        +PNE+T  +VL+A         L+ G+  H+++ K  +  D 
Subjt:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVME------YKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDP

Query:  IISGALLDMYAKRGSIQESQRSIN
        ++  AL+DMYAK GS++ ++R  N
Subjt:  IISGALLDMYAKRGSIQESQRSIN

Q84MA3 Pentatricopeptide repeat-containing protein At4g32430, mitochondrial3.4e-3661.34Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        +YAKFE ++DA + F ++ + EIISWNA+ISG+AQN    EAL+ FL A  E  PNEYTFGSVLNAI A  EDI +K GQRCH+HL+K+GLN  P++S A
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRG+I ES++  N
Subjt:  LLDMYAKRGSIQESQRSIN

Q9LYV3 Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial8.1e-1434.26Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG
        +Y +   M DA +VF E+P  +++ W+ +I+ + QN  C EA++ F+     +  PNE+T  S+LN  + G+       G++ H  ++KVG + D  +S 
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG

Query:  ALLDMYAK
        AL+D+YAK
Subjt:  ALLDMYAK

Q9SKQ4 Pentatricopeptide repeat-containing protein At2g210903.6e-1434.48Show/hide
Query:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAV-MEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        YAK   M+ A ++F E+P    +SW ALI+GY +      AL+ F   + +  KP ++TF S L    A      L+HG+  H ++I+  +  + I+  +
Subjt:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAV-MEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQR
        L+DMY+K GS++ S+R
Subjt:  LLDMYAKRGSIQESQR

Arabidopsis top hitse value%identityAlignment
AT2G21090.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.6e-1534.48Show/hide
Query:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAV-MEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        YAK   M+ A ++F E+P    +SW ALI+GY +      AL+ F   + +  KP ++TF S L    A      L+HG+  H ++I+  +  + I+  +
Subjt:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAV-MEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQR
        L+DMY+K GS++ S+R
Subjt:  LLDMYAKRGSIQESQR

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein2.9e-1433.87Show/hide
Query:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVME------YKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDP
        YAK   + DA ++F E+P   +ISW+ LI+GY      +EAL+ F    +        +PNE+T  +VL+A         L+ G+  H+++ K  +  D 
Subjt:  YAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVME------YKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDP

Query:  IISGALLDMYAKRGSIQESQRSIN
        ++  AL+DMYAK GS++ ++R  N
Subjt:  IISGALLDMYAKRGSIQESQRSIN

AT4G32430.1 Pentatricopeptide repeat (PPR) superfamily protein2.4e-3761.34Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA
        +YAKFE ++DA + F ++ + EIISWNA+ISG+AQN    EAL+ FL A  E  PNEYTFGSVLNAI A  EDI +K GQRCH+HL+K+GLN  P++S A
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGA

Query:  LLDMYAKRGSIQESQRSIN
        LLDMYAKRG+I ES++  N
Subjt:  LLDMYAKRGSIQESQRSIN

AT4G33990.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.2e-1539.83Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYK----PNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPI
        MYAK   +  A  VF  LP  ++ISWN +ISGYAQN    EA+E  +Y +ME +     N+ T+ SVL A S       L+ G + H  L+K GL  D  
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYK----PNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPI

Query:  ISGALLDMYAKRGSIQES
        +  +L DMY K G ++++
Subjt:  ISGALLDMYAKRGSIQES

AT5G13230.1 Tetratricopeptide repeat (TPR)-like superfamily protein5.7e-1534.26Show/hide
Query:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG
        +Y +   M DA +VF E+P  +++ W+ +I+ + QN  C EA++ F+     +  PNE+T  S+LN  + G+       G++ H  ++KVG + D  +S 
Subjt:  MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEY-KPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISG

Query:  ALLDMYAK
        AL+D+YAK
Subjt:  ALLDMYAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACGGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAAAATGC
TTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGCGAAGAAGACA
TACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTAAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTATGCAAAGCGTGGGAGC
ATTCAAGAGTCCCAAAGATCTATAAATTTCAAAAGTTCCTCAGTTTTCAAAAAATACAACTATTACCAGGCTAATGTT
mRNA sequenceShow/hide mRNA sequence
ATGTATGCTAAATTTGAGTTTATGCAAGATGCGTCAAGAGTGTTCATCGAACTTCCATACGGAGAGATAATATCATGGAATGCCTTAATTTCTGGGTATGCTCAAAATGC
TTTATGCCAAGAAGCTTTAGAGGCATTTCTTTATGCAGTAATGGAATATAAGCCAAACGAATACACCTTTGGGAGTGTCCTGAATGCAATCAGTGCCGGCGAAGAAGACA
TACCTTTAAAGCATGGCCAACGTTGCCATTCTCATTTGATTAAAGTTGGACTAAACTTCGACCCTATAATTTCAGGTGCCCTCCTAGACATGTATGCAAAGCGTGGGAGC
ATTCAAGAGTCCCAAAGATCTATAAATTTCAAAAGTTCCTCAGTTTTCAAAAAATACAACTATTACCAGGCTAATGTT
Protein sequenceShow/hide protein sequence
MYAKFEFMQDASRVFIELPYGEIISWNALISGYAQNALCQEALEAFLYAVMEYKPNEYTFGSVLNAISAGEEDIPLKHGQRCHSHLIKVGLNFDPIISGALLDMYAKRGS
IQESQRSINFKSSSVFKKYNYYQANV