; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G18790 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G18790
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGlial fibrillary acidic protein-like
Genome locationChr1:14237302..14238287
RNA-Seq ExpressionCSPI01G18790
SyntenyCSPI01G18790
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025321.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]1.7e-3740.62Show/hide
Query:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------
        D    +  ELEK+ +SLN EAIQ+RKKNKRLLR+IA +H E EA+KVCI +LK E+E+++                                        
Subjt:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------

Query:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ
                ++ V S E QLLICR AR+V+T+D+A+L+ +++E+  DF +W+D+Y  +R +Y+   R++E+G +KLR MA ++ Q S +A  L++ ++PT+
Subjt:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ

Query:  RGDRELSHFLEIIGHYLGRFGCYH
          D ELSHFL IIG  LGRFGCYH
Subjt:  RGDRELSHFLEIIGHYLGRFGCYH

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]6.6e-3438.21Show/hide
Query:  KVQEAVEAWKVVRRMKSLRHCEGTTNQYNIWRAARNGFEFATTPQYSDP-INFRT-AELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEA---------
        K+ EAVEAWK V++MKSLRHCEGTT QY+ WRA+RNG       +   P I  +   + EK++  L      +  +N++L  ++     +A         
Subjt:  KVQEAVEAWKVVRRMKSLRHCEGTTNQYNIWRAARNGFEFATTPQYSDP-INFRT-AELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEA---------

Query:  ------------EAQKVCIRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGT
                    E  +  I E K +L E  SK     + V S E QLLICR AR+V+T+D+A+L+ +++E+  DF +W+D+Y  +R +Y+    ++E+G 
Subjt:  ------------EAQKVCIRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGT

Query:  KKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLG
        +KLR MAR++ Q S +A  L++ ++PT+  D+ELSHFL IIG  LG
Subjt:  KKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLG

KAA0033848.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]3.5e-4364.86Show/hide
Query:  KRLLRDIATMHSEAEAQKVCIRELKQELERVSKETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLR
        +R+   I  + +  +  K+ I E +Q    + +E V S EHQLLICRNAR+VVTEDHARL NEHKEVL DFAIWRD+YNIMRH+YE V+ QIEQG KKLR
Subjt:  KRLLRDIATMHSEAEAQKVCIRELKQELERVSKETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLR

Query:  HMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH
        HMAR + Q STR I LQ++IVP QRG RELS FL IIGHYLG FGCYH
Subjt:  HMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH

KAA0046606.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]6.4e-3747.64Show/hide
Query:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVC---------IRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDH
        D    +  ELEK+ +SLN EAIQ+RKKNKRLLR+IA +H E EA+K           I E K +L E  SK     + V S E QLLICR ARKV+T+D+
Subjt:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVC---------IRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDH

Query:  ARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH
        A+L+ +++E+  DF +W+D+Y  +R +Y+    ++E+G +KLR MAR++ Q S +A  L++ ++PT+  D+ELSHFL IIG  LGRF CYH
Subjt:  ARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH

KAA0065294.1 glial fibrillary acidic protein-like [Cucumis melo var. makuwa]8.4e-3740.18Show/hide
Query:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------
        D    +  ELEK+ +SLN EAIQ+RKKNKRLLR+IA +H E EA+KVCI +LK E+E+++                                        
Subjt:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------

Query:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ
                ++ V S E QLLICR AR+V+ +D+A+L+ +++E+  DF +W+D+Y  +R +Y+    ++E+G +KLR MAR++ Q S +A  L++ ++PT+
Subjt:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ

Query:  RGDRELSHFLEIIGHYLGRFGCYH
          D+ELSHFL IIG  LGRFGCYH
Subjt:  RGDRELSHFLEIIGHYLGRFGCYH

TrEMBL top hitse value%identityAlignment
A0A5A7SM49 Glial fibrillary acidic protein-like8.2e-3840.62Show/hide
Query:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------
        D    +  ELEK+ +SLN EAIQ+RKKNKRLLR+IA +H E EA+KVCI +LK E+E+++                                        
Subjt:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------

Query:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ
                ++ V S E QLLICR AR+V+T+D+A+L+ +++E+  DF +W+D+Y  +R +Y+   R++E+G +KLR MA ++ Q S +A  L++ ++PT+
Subjt:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ

Query:  RGDRELSHFLEIIGHYLGRFGCYH
          D ELSHFL IIG  LGRFGCYH
Subjt:  RGDRELSHFLEIIGHYLGRFGCYH

A0A5A7SUT0 Reverse transcriptase3.2e-3438.21Show/hide
Query:  KVQEAVEAWKVVRRMKSLRHCEGTTNQYNIWRAARNGFEFATTPQYSDP-INFRT-AELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEA---------
        K+ EAVEAWK V++MKSLRHCEGTT QY+ WRA+RNG       +   P I  +   + EK++  L      +  +N++L  ++     +A         
Subjt:  KVQEAVEAWKVVRRMKSLRHCEGTTNQYNIWRAARNGFEFATTPQYSDP-INFRT-AELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEA---------

Query:  ------------EAQKVCIRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGT
                    E  +  I E K +L E  SK     + V S E QLLICR AR+V+T+D+A+L+ +++E+  DF +W+D+Y  +R +Y+    ++E+G 
Subjt:  ------------EAQKVCIRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGT

Query:  KKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLG
        +KLR MAR++ Q S +A  L++ ++PT+  D+ELSHFL IIG  LG
Subjt:  KKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLG

A0A5A7TXA1 Glial fibrillary acidic protein-like3.1e-3747.64Show/hide
Query:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVC---------IRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDH
        D    +  ELEK+ +SLN EAIQ+RKKNKRLLR+IA +H E EA+K           I E K +L E  SK     + V S E QLLICR ARKV+T+D+
Subjt:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVC---------IRELKQEL-ERVSK-----ETVTSFEHQLLICRNARKVVTEDH

Query:  ARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH
        A+L+ +++E+  DF +W+D+Y  +R +Y+    ++E+G +KLR MAR++ Q S +A  L++ ++PT+  D+ELSHFL IIG  LGRF CYH
Subjt:  ARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH

A0A5A7VDD9 Glial fibrillary acidic protein-like4.1e-3740.18Show/hide
Query:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------
        D    +  ELEK+ +SLN EAIQ+RKKNKRLLR+IA +H E EA+KVCI +LK E+E+++                                        
Subjt:  DPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS----------------------------------------

Query:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ
                ++ V S E QLLICR AR+V+ +D+A+L+ +++E+  DF +W+D+Y  +R +Y+    ++E+G +KLR MAR++ Q S +A  L++ ++PT+
Subjt:  --------KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQ

Query:  RGDRELSHFLEIIGHYLGRFGCYH
          D+ELSHFL IIG  LGRFGCYH
Subjt:  RGDRELSHFLEIIGHYLGRFGCYH

A0A5D3BQ93 Glial fibrillary acidic protein-like1.7e-4364.86Show/hide
Query:  KRLLRDIATMHSEAEAQKVCIRELKQELERVSKETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLR
        +R+   I  + +  +  K+ I E +Q    + +E V S EHQLLICRNAR+VVTEDHARL NEHKEVL DFAIWRD+YNIMRH+YE V+ QIEQG KKLR
Subjt:  KRLLRDIATMHSEAEAQKVCIRELKQELERVSKETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLR

Query:  HMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH
        HMAR + Q STR I LQ++IVP QRG RELS FL IIGHYLG FGCYH
Subjt:  HMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLGRFGCYH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTCAAGGTACAAGAAGCGGTAGAAGCATGGAAGGTTGTAAGAAGAATGAAAAGTCTGCGACATTGTGAGGGTACTACAAATCAGTACAACATTTGGAGAGCCGC
TAGAAATGGATTTGAATTTGCTACTACTCCACAATATTCAGACCCCATCAATTTTAGGACAGCAGAGTTGGAAAAAGACATGAATTCTTTAAACATTGAAGCTATTCAAA
TTAGAAAGAAAAACAAAAGATTACTGAGAGATATTGCTACTATGCATAGTGAAGCTGAAGCTCAAAAAGTGTGCATCAGAGAATTGAAGCAGGAATTAGAAAGAGTGAGT
AAGGAGACTGTTACAAGTTTTGAACACCAGCTGTTGATTTGTCGCAATGCACGAAAGGTGGTAACAGAAGATCATGCTCGATTATTGAACGAGCACAAAGAAGTGTTAGG
AGATTTTGCAATTTGGAGAGATGACTATAACATTATGAGACACAGATATGAGGTTGTTAGAAGACAAATTGAACAAGGAACGAAAAAGCTAAGGCATATGGCAAGAATGT
CATATCAGCTCTCAACACGAGCTATAGTCCTTCAGGAAAACATTGTACCAACACAACGAGGCGATCGAGAGTTGTCCCACTTTCTAGAGATTATAGGGCATTATCTTGGG
CGTTTTGGGTGCTACCATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGTCAAGGTACAAGAAGCGGTAGAAGCATGGAAGGTTGTAAGAAGAATGAAAAGTCTGCGACATTGTGAGGGTACTACAAATCAGTACAACATTTGGAGAGCCGC
TAGAAATGGATTTGAATTTGCTACTACTCCACAATATTCAGACCCCATCAATTTTAGGACAGCAGAGTTGGAAAAAGACATGAATTCTTTAAACATTGAAGCTATTCAAA
TTAGAAAGAAAAACAAAAGATTACTGAGAGATATTGCTACTATGCATAGTGAAGCTGAAGCTCAAAAAGTGTGCATCAGAGAATTGAAGCAGGAATTAGAAAGAGTGAGT
AAGGAGACTGTTACAAGTTTTGAACACCAGCTGTTGATTTGTCGCAATGCACGAAAGGTGGTAACAGAAGATCATGCTCGATTATTGAACGAGCACAAAGAAGTGTTAGG
AGATTTTGCAATTTGGAGAGATGACTATAACATTATGAGACACAGATATGAGGTTGTTAGAAGACAAATTGAACAAGGAACGAAAAAGCTAAGGCATATGGCAAGAATGT
CATATCAGCTCTCAACACGAGCTATAGTCCTTCAGGAAAACATTGTACCAACACAACGAGGCGATCGAGAGTTGTCCCACTTTCTAGAGATTATAGGGCATTATCTTGGG
CGTTTTGGGTGCTACCATTAG
Protein sequenceShow/hide protein sequence
MIVKVQEAVEAWKVVRRMKSLRHCEGTTNQYNIWRAARNGFEFATTPQYSDPINFRTAELEKDMNSLNIEAIQIRKKNKRLLRDIATMHSEAEAQKVCIRELKQELERVS
KETVTSFEHQLLICRNARKVVTEDHARLLNEHKEVLGDFAIWRDDYNIMRHRYEVVRRQIEQGTKKLRHMARMSYQLSTRAIVLQENIVPTQRGDRELSHFLEIIGHYLG
RFGCYH