CuGenDBv2

Gene ID	CSPI01G18810
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Retrotrans_gag domain-containing protein
Genome location	Chr1:14239051..14239506
RNA-Seq Expression	CSPI01G18810
Synteny	CSPI01G18810
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR005162 - Retrotransposon gag domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0033221.1 uncharacterized protein E6C27_scaffold845G00100 [Cucumis melo var. makuwa]

9.8e-66

88.57

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQDSLV PAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+LT MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

KAA0055146.1 uncharacterized protein E6C27_scaffold231G00770 [Cucumis melo var. makuwa]

2.9e-65

87.86

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H++KLLIHCFQDSLVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+L  MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

KAA0061241.1 uncharacterized protein E6C27_scaffold455G00760 [Cucumis melo var. makuwa]

1.7e-65

87.86

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQD+LVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PP TDK+LT MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

KAA0063019.1 uncharacterized protein E6C27_scaffold468G001210 [Cucumis melo var. makuwa]

2.2e-65

87.86

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQDSLVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+L  MFINTLR P YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]

1.5e-66

89.29

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQDSLVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+LT MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SUT0 Reverse transcriptase

4.7e-66

88.57

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQDSLV PAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+LT MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

A0A5A7ULI2 Retrotrans_gag domain-containing protein

1.4e-65

87.86

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H++KLLIHCFQDSLVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+L  MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

A0A5A7V681 Retrotrans_gag domain-containing protein

8.1e-66

87.86

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQD+LVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PP TDK+LT MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

A0A5A7VAU5 Uncharacterized protein

7.3e-67

89.29

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQDSLVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+LT MFINTLRAP YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

A0A5A7VBN6 Retrotrans_gag domain-containing protein

1.1e-65

87.86

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Query:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ
        CPKSHLVMYCRKMSAY H+DKLLIHCFQDSLVGPAS WYM LDGSQVH WKDLADSFLKQYKYNIDMAPD LD QRMEK++VETFKEYAQRWRELAAQVQ
Subjt:  CPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQ

Query:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE
        PPLTDK+L  MFINTLR P YDRMVGSASTNFSDVI + E
Subjt:  PPLTDKKLTTMFINTLRAPNYDRMVGSASTNFSDVIRMEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTGTCCAAAGAGTCACTTGGTGATGTACTGTCGAAAAATGTCAGCTTACACTCATAATGATAAATTGTTGATTCATTGCTTCCAAGATAGCCTAGTTGGCCCAGCTTC
TCACTGGTACATGTATTTGGATGGATCACAAGTGCATATGTGGAAGGATCTTGCTGACTCATTCCTAAAACAATATAAGTATAACATTGATATGGCACCCGATCATCTAG
ATTTTCAAAGGATGGAAAAAAGGAGTGTTGAAACTTTTAAAGAGTATGCACAACGATGGAGAGAGTTAGCTGCACAAGTACAACCTCCCCTGACCGATAAAAAATTGACA
ACCATGTTTATAAATACTCTTCGGGCCCCAAACTATGATAGAATGGTTGGAAGTGCCTCAACTAATTTCTCGGATGTCATAAGAATGGAAGAATTACAGATTTTGCTTCA
GAATCAAGAAAAATAA

mRNA sequence

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Protein sequence

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MCPKSHLVMYCRKMSAYTHNDKLLIHCFQDSLVGPASHWYMYLDGSQVHMWKDLADSFLKQYKYNIDMAPDHLDFQRMEKRSVETFKEYAQRWRELAAQVQPPLTDKKLT
TMFINTLRAPNYDRMVGSASTNFSDVIRMEELQILLQNQEK

CSPI01G18810 (gene) of Cucumber (PI 183967) v1 genome