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CSPI01G18830 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G18830
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr1:14243211..14245150
RNA-Seq ExpressionCSPI01G18830
SyntenyCSPI01G18830
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033845.1 uncharacterized protein E6C27_scaffold43059G00190 [Cucumis melo var. makuwa]4.3e-6281.88Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEK SL GR+AKW+VLL EYDII VTRK +KGSAI DCLA+  VEDYEPMK EF DEDVM VS+T QDTE WTM FDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
         DG +YPLT KLYF+CT+NMAEYEACSMGVQMAYDMKIKKLQVY DSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

TYK16555.1 protein NYNRIN-like [Cucumis melo var. makuwa]1.5e-5166.44Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGR+AKW+VLLSEYDI+ VT+K +KGSA+AD LA   V DYEPM+ +F DE++  V +  +D ETWTMLFDGA+NE+GHG+G +L  
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        P+G  +PLTAKL F CT+N+AEYEAC MG+Q+A DM IKKL+V GDS+L
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

XP_008447313.1 PREDICTED: uncharacterized protein LOC103489784 [Cucumis melo]6.8e-5267.11Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLS ++AKW VLL E+DI+ +TRK +KGS I DCL  L +EDYEPMKF+F DED+MT+  T  D  TWTM+FD ATN+VGHG+G  L  
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        PD   YP T KLYF+CTNNM EY+ACSMGV++AY+MKIK L+V GDSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

XP_016899404.1 PREDICTED: uncharacterized protein LOC107990505 [Cucumis melo]1.7e-6685.91Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGR+AKW+VL SEYDII VTR  VKGSAI DCLA L VEDYE MKFEF DEDVMTVS+TPQDTE WTM FDGATNEVGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        PDG +YPLTAKLYF+CTNNMAEYE CSMGV+MAYD+KIKKLQVY DSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]4.0e-5267.55Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTV--SETPQDTETWTMLFDGATNEVGHGVGAIL
        MDPIKYIFEKPSLSGR+A+W+VLLSEYDI+ VTRK +KGSA+AD LA   + DY P+KF+F DE + T+  SE   D +TWTM+FDGA+NE+GHG+G IL
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTV--SETPQDTETWTMLFDGATNEVGHGVGAIL

Query:  TFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
          P G  YPLTA+L F+CT+NMAEYEACSMGVQ A DMK+KKL+V+GDS+L
Subjt:  TFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

TrEMBL top hitse value%identityAlignment
A0A1S3BH42 uncharacterized protein LOC1034897843.3e-5267.11Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLS ++AKW VLL E+DI+ +TRK +KGS I DCL  L +EDYEPMKF+F DED+MT+  T  D  TWTM+FD ATN+VGHG+G  L  
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        PD   YP T KLYF+CTNNM EY+ACSMGV++AY+MKIK L+V GDSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

A0A1S4DTT9 uncharacterized protein LOC1079905058.1e-6785.91Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGR+AKW+VL SEYDII VTR  VKGSAI DCLA L VEDYE MKFEF DEDVMTVS+TPQDTE WTM FDGATNEVGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        PDG +YPLTAKLYF+CTNNMAEYE CSMGV+MAYD+KIKKLQVY DSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

A0A5A7UKV4 Retrovirus-related Pol polyprotein from transposon 17.68.1e-6785.91Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEKPSLSGR+AKW+VL SEYDII VTR  VKGSAI DCLA L VEDYE MKFEF DEDVMTVS+TPQDTE WTM FDGATNEVGHGVGAILTF
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        PDG +YPLTAKLYF+CTNNMAEYE CSMGV+MAYD+KIKKLQVY DSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

A0A5D3BPI8 RNase H domain-containing protein2.1e-6281.88Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF
        MDPIKYIFEK SL GR+AKW+VLL EYDII VTRK +KGSAI DCLA+  VEDYEPMK EF DEDVM VS+T QDTE WTM FDGATNEVGHGVGAILT 
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTF

Query:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
         DG +YPLT KLYF+CT+NMAEYEACSMGVQMAYDMKIKKLQVY DSLL
Subjt:  PDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

A0A6J1E2J7 Ribonuclease H1.9e-5267.55Show/hide
Query:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTV--SETPQDTETWTMLFDGATNEVGHGVGAIL
        MDPIKYIFEKPSLSGR+A+W+VLLSEYDI+ VTRK +KGSA+AD LA   + DY P+KF+F DE + T+  SE   D +TWTM+FDGA+NE+GHG+G IL
Subjt:  MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTV--SETPQDTETWTMLFDGATNEVGHGVGAIL

Query:  TFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
          P G  YPLTA+L F+CT+NMAEYEACSMGVQ A DMK+KKL+V+GDS+L
Subjt:  TFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G01410.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0535.71Show/hide
Query:  VSETP-QDTETWTMLFDGAT--NEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        ++ TP +  ++ T+ FDGA+  N    G GA+L   D        +   N TNN+AEY A  +G++ A D   K + V GDS+L
Subjt:  VSETP-QDTETWTMLFDGAT--NEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL

AT3G01410.2 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.3e-0535.71Show/hide
Query:  VSETP-QDTETWTMLFDGAT--NEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL
        ++ TP +  ++ T+ FDGA+  N    G GA+L   D        +   N TNN+AEY A  +G++ A D   K + V GDS+L
Subjt:  VSETP-QDTETWTMLFDGAT--NEVGHGVGAILTFPDGGTYPLTAKLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTATAAAGTATATTTTTGAAAAGCCATCTCTGTCTGGAAGAATGGCTAAATGGAAAGTATTGCTATCCGAGTATGACATCATCTGTGTTACAAGAAAGACAGT
AAAAGGAAGTGCAATTGCTGATTGTCTAGCTCATTTGTCAGTTGAAGACTATGAACCAATGAAATTTGAATTTTCAGATGAGGACGTCATGACAGTATCAGAGACACCGC
AGGATACAGAAACATGGACGATGTTGTTTGATGGAGCCACAAATGAAGTAGGACATGGTGTGGGAGCTATTCTAACGTTTCCTGATGGAGGAACATATCCTCTAACTGCT
AAGTTGTACTTTAATTGCACGAATAACATGGCGGAGTATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTACAAGTTTATGGAGATTC
TCTCTTGGAAGGACGTCAGAAATATTATGTTCGGAGACCCATTCCCGACGCAACACAAAGATGCTTCTGGATTGACTTTTCCCCGACGTGCATTTGGTCGAGAGGTCAAG
GTGTCGGGGTAACCTTATATGACTCCCCTGACATTCACGAGGACGTCGGGAGAAGGTGTTTCCCGAAGCTACATCATATTGCAGCTCAGGCATCCTTCTCTGCTCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATCCTATAAAGTATATTTTTGAAAAGCCATCTCTGTCTGGAAGAATGGCTAAATGGAAAGTATTGCTATCCGAGTATGACATCATCTGTGTTACAAGAAAGACAGT
AAAAGGAAGTGCAATTGCTGATTGTCTAGCTCATTTGTCAGTTGAAGACTATGAACCAATGAAATTTGAATTTTCAGATGAGGACGTCATGACAGTATCAGAGACACCGC
AGGATACAGAAACATGGACGATGTTGTTTGATGGAGCCACAAATGAAGTAGGACATGGTGTGGGAGCTATTCTAACGTTTCCTGATGGAGGAACATATCCTCTAACTGCT
AAGTTGTACTTTAATTGCACGAATAACATGGCGGAGTATGAAGCATGCAGTATGGGAGTTCAAATGGCCTATGACATGAAGATTAAGAAGTTACAAGTTTATGGAGATTC
TCTCTTGGAAGGACGTCAGAAATATTATGTTCGGAGACCCATTCCCGACGCAACACAAAGATGCTTCTGGATTGACTTTTCCCCGACGTGCATTTGGTCGAGAGGTCAAG
GTGTCGGGGTAACCTTATATGACTCCCCTGACATTCACGAGGACGTCGGGAGAAGGTGTTTCCCGAAGCTACATCATATTGCAGCTCAGGCATCCTTCTCTGCTCTTTAA
Protein sequenceShow/hide protein sequence
MDPIKYIFEKPSLSGRMAKWKVLLSEYDIICVTRKTVKGSAIADCLAHLSVEDYEPMKFEFSDEDVMTVSETPQDTETWTMLFDGATNEVGHGVGAILTFPDGGTYPLTA
KLYFNCTNNMAEYEACSMGVQMAYDMKIKKLQVYGDSLLEGRQKYYVRRPIPDATQRCFWIDFSPTCIWSRGQGVGVTLYDSPDIHEDVGRRCFPKLHHIAAQASFSAL