CuGenDBv2

Gene ID	CSPI01G19000
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ribonuclease H
Genome location	Chr1:14428872..14429228
RNA-Seq Expression	CSPI01G19000
Synteny	CSPI01G19000
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_031735972.1 uncharacterized protein LOC116401693 [Cucumis sativus]

1.1e-56

98.13

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

XP_031737045.1 uncharacterized protein LOC116402134 [Cucumis sativus]

1.1e-56

98.13

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

XP_031737372.1 uncharacterized protein LOC116402244 [Cucumis sativus]

1.1e-56

98.13

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

XP_031742032.1 uncharacterized protein LOC116404025 [Cucumis sativus]

1.1e-56

98.13

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]

1.1e-56

98.13

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPV8 Ribonuclease H

2.2e-50

81.74

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        M+QDS+DY KKCE CQYHANFIHQP EPLHP+VASW FEAWGLDLVGPITPKSSAGHSYILAAT+YFS+WAEAI LREAKKENV +FIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNGNGLRYDLI
        RIVTDNG      +I
Subjt:  RIVTDNGNGLRYDLI

A0A5A7T485 Reverse transcriptase

2.6e-51

82.61

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        M+QDS+DY KKCE CQYHANFIHQP EPLHPT+ASWPFEAWGLDLVGPITPKSSAGH YILAATDYFS+W EAI LREAKKENVA+FIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNGNGLRYDLI
        RIVTDNG      +I
Subjt:  RIVTDNGNGLRYDLI

A0A5A7UYY5 Ribonuclease H

2.6e-51

88.79

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        M+QDS+DY KKCE CQYHANFIHQPPEPLHPTV SWPFEAWGLDLVGPITPKSSA HSYILAATDYFSRWAEAI LR+AKKENVA+FIRTHIIY+Y I H
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

A0A5D3BV77 Reverse transcriptase

2.6e-51

82.61

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        M+QDS+DY KKCE CQYHANFIHQP EPLHPT+ASWPFEAWGLDLVGPITPKSSAGH YILAATDYFS+W EAI LREAKKENVA+FIRTHIIY+Y IPH
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNGNGLRYDLI
        RIVTDNG      +I
Subjt:  RIVTDNGNGLRYDLI

A0A5D3BVM5 Ribonuclease H

2.6e-51

88.79

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Query:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH
        M+QDS+DY KKCE CQYHANFIHQPPEPLHPTV SWPFEAWGLDLVGPITPKSSA HSYILAATDYFSRWAEAI LR+AKKENVA+FIRTHIIY+Y I H
Subjt:  MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPH

Query:  RIVTDNG
        RIVTDNG
Subjt:  RIVTDNG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATCCAAGATTCAATAGACTATGTGAAGAAGTGTGAGCCTTGTCAATACCATGCAAACTTCATACACCAACCTCCAGAACCTCTTCATCCAACTGTGGCTTCTTGGCC
TTTTGAGGCTTGGGGACTCGATCTGGTTGGCCCCATTACACCAAAATCATCAGCAGGACATTCTTATATCCTAGCAGCAACAGACTATTTTTCAAGGTGGGCTGAGGCCA
TTTCATTGAGAGAAGCCAAGAAGGAGAACGTGGCAGACTTTATTCGAACACACATCATCTATCAATACGATATTCCACACCGAATCGTGACGGATAATGGAAATGGCCTA
CGTTATGACTTGATCCCTATATTATAA

mRNA sequence

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Protein sequence

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MIQDSIDYVKKCEPCQYHANFIHQPPEPLHPTVASWPFEAWGLDLVGPITPKSSAGHSYILAATDYFSRWAEAISLREAKKENVADFIRTHIIYQYDIPHRIVTDNGNGL
RYDLIPIL

CSPI01G19000 (gene) of Cucumber (PI 183967) v1 genome