; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G19160 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G19160
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H
Genome locationChr1:14548937..14550091
RNA-Seq ExpressionCSPI01G19160
SyntenyCSPI01G19160
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]2.5e-13367.53Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD IHAAASPLHVLSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
        G+LYQ+RLMRA N                                       KKAFSGGALLLTNMDGVELKN VNSDYVR+YYA
Subjt:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

XP_031738857.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402780 [Cucumis sativus]2.5e-13367.53Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD IHAAASPLHVLSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
        G+LYQ+RLMRA N                                       KKAFSGGALLLTNMDGVELKN VNSDYVR+YYA
Subjt:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

XP_031741309.1 LOW QUALITY PROTEIN: uncharacterized protein LOC105435093 [Cucumis sativus]2.5e-13367.53Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD IHAAASPLHVLSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
        G+LYQ+RLMRA N                                       KKAFSGGALLLTNMDGVELKN VNSDYVR+YYA
Subjt:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]2.5e-13367.53Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD IHAAASPLHVLSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
        G+LYQ+RLMRA N                                       KKAFSGGALLLTNMDGVELKN VNSDYVR+YYA
Subjt:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

XP_031742474.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404360 [Cucumis sativus]2.5e-13367.53Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD IHAAASPLHVLSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
        G+LYQ+RLMRA N                                       KKAFSGGALLLTNMDGVELKN VNSDYVR+YYA
Subjt:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

TrEMBL top hitse value%identityAlignment
A0A5A7T1D0 RNA-directed DNA polymerase2.5e-11059.89Show/hide
Query:  MVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKAS
        MVLLRCVD EEAKQIM +IHEGICGTHANGH MAR+ILRSGYYWTTMESDCIKYARECKKCQIYMD IH AASPLHV+S PWPFSLWG+DVIGPIDPK S
Subjt:  MVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKAS

Query:  NGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE------------------------------------------------------
        NGHRFILV IDYFTKWIEAASY NVTRGVVLKFIKKE ICRYGL E                                                      
Subjt:  NGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE------------------------------------------------------

Query:  --------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGKLYQRRLMRACN---
                                  GA PF LVYGME VLPLEVE PSLRVL+EAKLDEAEWIRGRYEQLNF+EEK+LTAL+H +LYQRRLMRA N   
Subjt:  --------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSHGKLYQRRLMRACN---

Query:  ------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
                                            KKAFSGGALLLTNMDGVELK+ VNSDYVR+YYA
Subjt:  ------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

A0A5A7T1X2 Ribonuclease H2.2e-11168.4Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVD EEAKQIM +I+EGICGTHANGH MARQILRSGYYWTTMESDCIKYARECKKCQIYMD IH AAS LH+LSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEG-------------------------------------
        SLWG+DVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEG                                     
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEG-------------------------------------

Query:  -------------------------------------------ATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                   ATPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+H
Subjt:  -------------------------------------------ATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRR
        G+LYQ++
Subjt:  GKLYQRR

A0A5A7T7R4 Ribonuclease H4.6e-12563.12Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNHDMVLLRCVD EEAKQIMI+IHEGIC THANGH MARQILRS YYWTTMESDCIKY RECKKCQIYMD IH AASPLH+LSAPWPF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SLWG+DVIGPIDPKASNGHRF LV+IDYFTKWIE AS+CNVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNF+EEKRL AL+H
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA
         +LYQRRLMRA N                                       KKAFSGGALLLTNMDG+ELKN VNSDYVR+YYA
Subjt:  GKLYQRRLMRACN---------------------------------------KKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA

A0A5A7V4W7 RNA-directed DNA polymerase2.3e-10867.3Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLY RNHD+VLLRCVD EEAKQIM +IHEGICG HANGH  ARQILRSGYYWTTMESDCIKYARECKKCQIYMD IH  ASPLHVLSAP PF
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------
        SL G+DVIGPIDPKASNGHRFILVAIDYFTKWIE ASY NVTRGVVLKFIKKELICRYGLPE                                      
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE--------------------------------------

Query:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
                                                  G TPFSLVYGME VLPLEVEIPSLRVLMEAKLDEAEWIRGRYE LNF+EEKRL AL H
Subjt:  ------------------------------------------GATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH

Query:  GKLYQRRLMRACNKK
        GKLYQRRLMRA NKK
Subjt:  GKLYQRRLMRACNKK

A0A5A7VHZ0 Uncharacterized protein7.2e-11888.51Show/hide
Query:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF
        MNFFLSGEVLYKRNH+MVLLRCVD EEAKQIM  IHEGICGTHANGH MARQILRSGYYWTTMESDCIKYAR+CKKCQIYMD IH AASPLH+LS+PWP 
Subjt:  MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPF

Query:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWI
        SLWG+DVIGPIDPKASNGHRFILVAIDYF KWIEAASYCNVT+GVVLKFIKKELICRY    GATPFSLVYGME VLPLEVEIPSLRVLM+AKLDEAEWI
Subjt:  SLWGIDVIGPIDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWI

Query:  RGRYEQLNFIEEKRLTALSHGKLYQRRLMRACNKK
        RGRYEQLNF+EEKRL AL+H +LYQRRLMRA  KK
Subjt:  RGRYEQLNFIEEKRLTALSHGKLYQRRLMRACNKK

SwissProt top hitse value%identityAlignment
Q4R6I1 Gypsy retrotransposon integrase-like protein 19.3e-1430Show/hide
Query:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI
        V  EE K+++ E HE   G H +G +    ++ S YYWT++ +D  ++   C+ CQ+  + +   A   H+L    P+SL  +D++GP    ++  H + 
Subjt:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI

Query:  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE
        ++  D FTKW+     C+V+   V K I   +   YG P+
Subjt:  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE

Q5RBK0 Gypsy retrotransposon integrase-like protein 19.3e-1430.71Show/hide
Query:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI
        V  EE K+++ E HE   G H +G +    ++ S YYWT++ +D  ++   C+ CQ+  + +   A   H+L    P+SL  +D++GP    ++  H + 
Subjt:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI

Query:  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE
        ++  D FTKWI     C+V+   V K I   +   YG P+
Subjt:  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE

Q66H30 Gypsy retrotransposon integrase-like protein 11.0e-1230.5Show/hide
Query:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD-MIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRF
        V  EE K+++ E HE   G H +G +    ++ S YYWT++ +D  ++   C+ CQ+    +I A    L V+  PW  S+  +D++GP    +S  H +
Subjt:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD-MIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRF

Query:  ILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE
         ++  D FTKW+     C+V+   + K I   +   YG P+
Subjt:  ILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE

Q8K259 Gypsy retrotransposon integrase-like protein 11.0e-1229.79Show/hide
Query:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD-MIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRF
        V  EE K+++ E HE   G H +G +    ++ SGYYWT++ +D  ++   C+ CQ+  + +I A    L ++  PW  S+  +D++GP    ++  H +
Subjt:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMD-MIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRF

Query:  ILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE
         ++  D FTKW+     C+V+   + K I   +   YG P+
Subjt:  ILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE

Q9NXP7 Gypsy retrotransposon integrase-like protein 17.1e-1430.71Show/hide
Query:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI
        V  EE K+++ E HE   G H +G +    ++ S YYWT++ +D  ++   C+ CQ+  + +   A   H+L    P+SL  +D++GP    ++  H + 
Subjt:  VDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGPIDPKASNGHRFI

Query:  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE
        ++  D FTKWI     C+V+   V K I   +   YG P+
Subjt:  LVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCATGATATGGTACTCCTTCGGTGTGTTGATGTGGAAGAAGCAAAACAAATTATGATAGAAATTCATGA
AGGAATATGTGGAACACATGCTAACGGACATACTATGGCCAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGACTGCATAAAATATGCAAGAGAAT
GTAAAAAGTGTCAAATTTATATGGATATGATTCATGCAGCAGCATCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTGTGGGGAATTGATGTTATTGGACCC
ATTGATCCTAAAGCCTCAAATGGTCATCGTTTTATTCTTGTAGCCATTGATTACTTCACTAAATGGATAGAGGCGGCATCTTACTGCAATGTTACAAGAGGAGTGGTACT
CAAGTTTATCAAAAAAGAGTTGATCTGTCGTTATGGTCTACCGGAGGGGGCAACACCATTTTCTTTGGTTTATGGCATGGAAGCTGTCCTGCCTTTAGAAGTTGAAATAC
CTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCATTGAAGAAAAACGTTTGACAGCATTAAGTCAT
GGAAAACTTTACCAAAGAAGACTAATGCGAGCATGCAATAAAAAGGCATTTTCAGGAGGAGCTTTGCTTTTAACCAATATGGATGGTGTTGAGTTAAAAAATTCTGTGAA
TTCAGATTATGTTCGAAAATACTATGCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAACTTTTTCTTAAGTGGTGAAGTTCTTTATAAAAGAAACCATGATATGGTACTCCTTCGGTGTGTTGATGTGGAAGAAGCAAAACAAATTATGATAGAAATTCATGA
AGGAATATGTGGAACACATGCTAACGGACATACTATGGCCAGACAAATACTTAGATCTGGTTATTATTGGACAACGATGGAATCAGACTGCATAAAATATGCAAGAGAAT
GTAAAAAGTGTCAAATTTATATGGATATGATTCATGCAGCAGCATCTCCATTGCATGTCTTGTCAGCACCATGGCCATTTTCTTTGTGGGGAATTGATGTTATTGGACCC
ATTGATCCTAAAGCCTCAAATGGTCATCGTTTTATTCTTGTAGCCATTGATTACTTCACTAAATGGATAGAGGCGGCATCTTACTGCAATGTTACAAGAGGAGTGGTACT
CAAGTTTATCAAAAAAGAGTTGATCTGTCGTTATGGTCTACCGGAGGGGGCAACACCATTTTCTTTGGTTTATGGCATGGAAGCTGTCCTGCCTTTAGAAGTTGAAATAC
CTTCATTGAGAGTTCTCATGGAAGCTAAGTTAGATGAAGCTGAATGGATACGAGGTCGTTATGAGCAGTTGAATTTCATTGAAGAAAAACGTTTGACAGCATTAAGTCAT
GGAAAACTTTACCAAAGAAGACTAATGCGAGCATGCAATAAAAAGGCATTTTCAGGAGGAGCTTTGCTTTTAACCAATATGGATGGTGTTGAGTTAAAAAATTCTGTGAA
TTCAGATTATGTTCGAAAATACTATGCGTGA
Protein sequenceShow/hide protein sequence
MNFFLSGEVLYKRNHDMVLLRCVDVEEAKQIMIEIHEGICGTHANGHTMARQILRSGYYWTTMESDCIKYARECKKCQIYMDMIHAAASPLHVLSAPWPFSLWGIDVIGP
IDPKASNGHRFILVAIDYFTKWIEAASYCNVTRGVVLKFIKKELICRYGLPEGATPFSLVYGMEAVLPLEVEIPSLRVLMEAKLDEAEWIRGRYEQLNFIEEKRLTALSH
GKLYQRRLMRACNKKAFSGGALLLTNMDGVELKNSVNSDYVRKYYA