; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G19320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G19320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr1:14783724..14784557
RNA-Seq ExpressionCSPI01G19320
SyntenyCSPI01G19320
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040427.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.9e-10580.17Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTKSLGGALYFV FTDDH R IWVYTLKTKDQV   FKQFHA VE+ETGEKLKC+RTDNGGEYCGPFDEYCRN+GI+HQKTPPK+ QLNGIA+RLNRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LPQSFWGEALNT++HVLNLTPCVPLGS+VPNRIW GKDISYSHLRVFGCKAFVHV KDER KLDAKTK CVFLGY QDEFGYR+Y   
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE
        KKKLIRSRDVVFVEDQTIA+IEKI E +SKH     E
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE

KAA0047570.1 putative retrotransposon [Cucumis melo var. makuwa]6.8e-13184.12Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTKSLGGALYFV FTDDH R IWVYTLKTKDQVLQ FKQFHA VE+ETGEKLKC+RTDNGGEYCGPFDEYCRN+GI+HQKTPPKTPQLNGIAERLNRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LPQSFWGEALNT+VHVLNLTPCVPLGS+VPNRIW GKDISYSHLRVFGCKAFVHV KDER KLDAKTK CVFLGY QDEFGYRLYDP 
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQFFDTDESSEHVGTEDNVQE
        KKKLIRSRDVVF+EDQTIA+IEKI E  SKHSD  I+LSSTSLT  ST+IEDE+QNEQFFDTDESSE VG ED+VQE
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQFFDTDESSEHVGTEDNVQE

RVW24012.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.7e-10369.77Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDNGGEY GPFDEYCR +GI+HQKTPPKTPQLNG+AER+NRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LP+SFWGEALNT+VHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+ CVF+GY QDE GYR YDP 
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ
        +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L    L  L TQ+EDE  ++Q
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ

RVW85908.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]3.5e-10369.77Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDNGGEY GPFDEYCR +GI+HQKTPPKTPQLNG+AER+NRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LP+SFWGEALNT+VHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+ CVF+GY QDE GYR YDP 
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ
        +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L    L  L TQ+EDE  ++Q
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ

TYJ98688.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]4.5e-10680.59Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTKSLGGALYFV FTDDH R IWVYTLKTKDQV   FKQFHA VE+ETGEKLKC+RTDNGGEYCGPFDEYCRN+GI+HQKTPPK+ QLNGIA+RLNRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LPQSFWGEALNT++HVLNLTPCVPLGS+VPNRIW GKDISYSHLRVFGCKAFVHV KDER KLDAKTK CVFLGY QDEFGYR+YD  
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE
        KKKLIRSRDVVFVEDQTIA+IEKI E +SKH     E
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE

TrEMBL top hitse value%identityAlignment
A0A438CLC2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-10369.77Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDNGGEY GPFDEYCR +GI+HQKTPPKTPQLNG+AER+NRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LP+SFWGEALNT+VHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+ CVF+GY QDE GYR YDP 
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ
        +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L    L  L TQ+EDE  ++Q
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ

A0A438HN89 Retrovirus-related Pol polyprotein from transposon TNT 1-941.7e-10369.77Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTK+LGG+LYFV F DDH R IWVYTLKTKDQVL  FKQFHA+VE+++GEKLKC+RTDNGGEY GPFDEYCR +GI+HQKTPPKTPQLNG+AER+NRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LP+SFWGEALNT+VHVLNLTPCVPL   VP+RIW   +ISY HLRVFGCKAFVH+ KDER KLDAKT+ CVF+GY QDE GYR YDP 
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ
        +KKL+RSRDVVF+ED TI +IEK    ES+HS +LI+L    L  L TQ+EDE  ++Q
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQ

A0A5A7TFU1 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-10580.17Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTKSLGGALYFV FTDDH R IWVYTLKTKDQV   FKQFHA VE+ETGEKLKC+RTDNGGEYCGPFDEYCRN+GI+HQKTPPK+ QLNGIA+RLNRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LPQSFWGEALNT++HVLNLTPCVPLGS+VPNRIW GKDISYSHLRVFGCKAFVHV KDER KLDAKTK CVFLGY QDEFGYR+Y   
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE
        KKKLIRSRDVVFVEDQTIA+IEKI E +SKH     E
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE

A0A5D3BKF7 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-10680.59Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTKSLGGALYFV FTDDH R IWVYTLKTKDQV   FKQFHA VE+ETGEKLKC+RTDNGGEYCGPFDEYCRN+GI+HQKTPPK+ QLNGIA+RLNRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LPQSFWGEALNT++HVLNLTPCVPLGS+VPNRIW GKDISYSHLRVFGCKAFVHV KDER KLDAKTK CVFLGY QDEFGYR+YD  
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE
        KKKLIRSRDVVFVEDQTIA+IEKI E +SKH     E
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIE

A0A5D3CVK2 Putative retrotransposon3.3e-13184.12Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL
        MKTKSLGGALYFV FTDDH R IWVYTLKTKDQVLQ FKQFHA VE+ETGEKLKC+RTDNGGEYCGPFDEYCRN+GI+HQKTPPKTPQLNGIAERLNRTL
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL

Query:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT
                    LPQSFWGEALNT+VHVLNLTPCVPLGS+VPNRIW GKDISYSHLRVFGCKAFVHV KDER KLDAKTK CVFLGY QDEFGYRLYDP 
Subjt:  ------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPT

Query:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQFFDTDESSEHVGTEDNVQE
        KKKLIRSRDVVF+EDQTIA+IEKI E  SKHSD  I+LSSTSLT  ST+IEDE+QNEQFFDTDESSE VG ED+VQE
Subjt:  KKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQIEDEVQNEQFFDTDESSEHVGTEDNVQE

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.9e-2832.84Show/hide
Query:  YFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEY-CGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL---------
        YFV F D        Y +K K  V   F+ F A  E     K+  +  DNG EY      ++C   GI +  T P TPQLNG++ER+ RT+         
Subjt:  YFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEY-CGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL---------

Query:  ---LPQSFWGEALNTIVHVLNLTPCVPL--GSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKLIRS
           L +SFWGEA+ T  +++N  P   L   SK P  +W  K     HLRVFG   +VH+ K+++ K D K+   +F+GY  +  G++L+D   +K I +
Subjt:  ---LPQSFWGEALNTIVHVLNLTPCVPL--GSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKLIRS

Query:  RDVVFVEDQTI----ANIEKIGEQESKHSDNLIELSSTSLTQLSTQIED---EVQNEQFFDTDESSEH
        RDVV  E   +       E +  ++SK S+N     + S   + T+  +   E  N QF    + SE+
Subjt:  RDVVFVEDQTI----ANIEKIGEQESKHSDNLIELSSTSLTQLSTQIED---EVQNEQFFDTDESSEH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-7149.11Show/hide
Query:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCG-PFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRT
        M+ +S+GG  YFV F DD  R +WVY LKTKDQV Q F++FHA+VE+ETG KLK +R+DNGGEY    F+EYC ++GI+H+KT P TPQ NG+AER+NRT
Subjt:  MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCG-PFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRT

Query:  L------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDP
        +            LP+SFWGEA+ T  +++N +P VPL  ++P R+W  K++SYSHL+VFGC+AF HV K++R KLD K+  C+F+GY  +EFGYRL+DP
Subjt:  L------------LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDP

Query:  TKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQ-IEDEV--QNEQFFDTDESSEHVGTEDNVQE
         KKK+IRSRDVVF E +     +   + ++    N + + STS    S +   DEV  Q EQ  +  E  E +  ++ V+E
Subjt:  TKKKLIRSRDVVFVEDQTIANIEKIGEQESKHSDNLIELSSTSLTQLSTQ-IEDEV--QNEQFFDTDESSEHVGTEDNVQE

P92512 Uncharacterized mitochondrial protein AtMg007103.8e-0740.74Show/hide
Query:  LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVH
        LP++F  +A NT VH++N  P   +   VP+ +W     +YS+LR FGC A++H
Subjt:  LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVH

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE17.3e-2732.16Show/hide
Query:  YFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL----------
        Y+V F D   R  W+Y LK K QV +TF  F  ++E     ++    +DNGGE+   + EY   +GI H  +PP TP+ NG++ER +R +          
Subjt:  YFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTL----------

Query:  --LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKLIRSRDV
          +P+++W  A    V+++N  P   L  + P +   G   +Y  LRVFGC  +  +    + KLD K++ CVFLGYS  +  Y        +L  SR V
Subjt:  --LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKLIRSRDV

Query:  VFVED-----QTIANIEKIGEQESKHS
         F E+       +A +  + EQ  + S
Subjt:  VFVED-----QTIANIEKIGEQESKHS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.6e-2733.81Show/hide
Query:  SLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNR------
        S+    Y+V F D   R  W+Y LK K QV  TF  F ++VE     ++  + +DNGGE+     +Y   +GI H  +PP TP+ NG++ER +R      
Subjt:  SLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNR------

Query:  -TLL-----PQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKL
         TLL     P+++W  A +  V+++N  P   L  + P +   G+  +Y  L+VFGC  +  +    R KL+ K+K C F+GYS  +  Y        +L
Subjt:  -TLL-----PQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKL

Query:  IRSRDVVFVE
          SR V F E
Subjt:  IRSRDVVFVE

Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.7e-0840.74Show/hide
Query:  LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVH
        LP++F  +A NT VH++N  P   +   VP+ +W     +YS+LR FGC A++H
Subjt:  LPQSFWGEALNTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGGCATTTACTGATGACCATTTAAGGACAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAAC
TTTTAAACAGTTTCATGCCGTTGTTGAAAAAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAA
ATAATGGCATTCAACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGAATAGCTGAAAGATTGAACAGAACATTGTTGCCACAGTCATTTTGGGGTGAAGCTTTA
AATACAATTGTACATGTTTTGAATCTCACACCATGTGTTCCTTTGGGATCAAAAGTTCCAAACAGAATATGGTTAGGTAAGGATATATCTTACAGTCACCTACGTGTCTT
TGGTTGTAAAGCTTTTGTTCATGTATCTAAAGATGAGAGACCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATAGTCAAGATGAGTTTGGTTATAGAT
TATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAAACATTGAGAAAATAGGTGAACAAGAGTCTAAGCATAGT
GATAATCTGATTGAATTGAGTTCAACCTCTTTGACACAGCTTTCTACACAGATAGAAGATGAGGTTCAAAATGAACAGTTTTTTGATACAGATGAGAGTTCTGAGCATGT
TGGGACAGAGGATAATGTTCAAGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAACAAAGTCTCTTGGGGGTGCTTTGTATTTTGTGGCATTTACTGATGACCATTTAAGGACAATATGGGTTTACACCTTGAAGACTAAAGATCAAGTGTTGCAAAC
TTTTAAACAGTTTCATGCCGTTGTTGAAAAAGAAACTGGTGAAAAGCTCAAGTGTGTTAGAACTGATAATGGAGGTGAGTATTGTGGACCTTTTGATGAATATTGTAGAA
ATAATGGCATTCAACATCAAAAGACACCTCCTAAGACCCCGCAGTTAAATGGAATAGCTGAAAGATTGAACAGAACATTGTTGCCACAGTCATTTTGGGGTGAAGCTTTA
AATACAATTGTACATGTTTTGAATCTCACACCATGTGTTCCTTTGGGATCAAAAGTTCCAAACAGAATATGGTTAGGTAAGGATATATCTTACAGTCACCTACGTGTCTT
TGGTTGTAAAGCTTTTGTTCATGTATCTAAAGATGAGAGACCAAAGCTTGATGCAAAAACCAAAGCATGTGTGTTTCTTGGTTATAGTCAAGATGAGTTTGGTTATAGAT
TATATGATCCAACTAAGAAAAAGCTTATAAGAAGTCGAGATGTTGTATTTGTTGAAGACCAAACAATAGCAAACATTGAGAAAATAGGTGAACAAGAGTCTAAGCATAGT
GATAATCTGATTGAATTGAGTTCAACCTCTTTGACACAGCTTTCTACACAGATAGAAGATGAGGTTCAAAATGAACAGTTTTTTGATACAGATGAGAGTTCTGAGCATGT
TGGGACAGAGGATAATGTTCAAGAATAG
Protein sequenceShow/hide protein sequence
MKTKSLGGALYFVAFTDDHLRTIWVYTLKTKDQVLQTFKQFHAVVEKETGEKLKCVRTDNGGEYCGPFDEYCRNNGIQHQKTPPKTPQLNGIAERLNRTLLPQSFWGEAL
NTIVHVLNLTPCVPLGSKVPNRIWLGKDISYSHLRVFGCKAFVHVSKDERPKLDAKTKACVFLGYSQDEFGYRLYDPTKKKLIRSRDVVFVEDQTIANIEKIGEQESKHS
DNLIELSSTSLTQLSTQIEDEVQNEQFFDTDESSEHVGTEDNVQE