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CSPI01G19360 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G19360
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationChr1:14801743..14802072
RNA-Seq ExpressionCSPI01G19360
SyntenyCSPI01G19360
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037163.1 envelope-like protein [Cucumis melo var. makuwa]3.1e-1854.95Show/hide
Query:  PPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSI
        PP+++     L P +  +    +  T K GR+++P NIPSVPIDGI FHHEEN Q WK+VVQR LADEVNVSDKHQSC++I+DLI +  ++
Subjt:  PPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSI

KAE8652900.1 hypothetical protein Csa_022673, partial [Cucumis sativus]1.4e-2368.18Show/hide
Query:  PPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQ
        P   T       SPP  T  PEP+GVTIKTGRR LP NIPSVPIDGISFHHEENAQ W++VVQ  LADEVN+S KHQSCV I++LI+Q
Subjt:  PPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQ

KAE8653123.1 hypothetical protein Csa_019972 [Cucumis sativus]3.2e-4794.23Show/hide
Query:  MGRESVPPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSISY
        MGRESV PPTTARTSNPLSPPQSTTSP+PQGVTIKTGRRRLPHNIPSVPID ISFHHEENAQRWKYVVQRHLADE+NVSDKHQSCVTIIDLISQV SISY
Subjt:  MGRESVPPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSISY

Query:  HSEC
        H EC
Subjt:  HSEC

TYK14492.1 uncharacterized protein E5676_scaffold15G00030 [Cucumis melo var. makuwa]3.1e-1851.52Show/hide
Query:  ESVPPPT--------TARTSNPLS--PPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLI
        E +PPPT          R  +P S  PP+  T    + VT KT R+++P N+PSVPIDGISFHHEE+ Q WK+V+Q+ + D+VN+SDKHQSC++I+DLI
Subjt:  ESVPPPT--------TARTSNPLS--PPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLI

TYK23857.1 uncharacterized protein E5676_scaffold419G00280 [Cucumis melo var. makuwa]3.1e-1867.19Show/hide
Query:  VTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQV
        +TIKTGR+++P NIPSVPIDGISFH EE+ QRWKYVV R +ADEVN+SDKH SC++++ LI+++
Subjt:  VTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQV

TrEMBL top hitse value%identityAlignment
A0A5A7URQ6 Uncharacterized protein1.5e-1850.49Show/hide
Query:  ESVPPPTTARTSNPLSP-----PQSTTSPEP---------QGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTII
        E +PPP    T +P++P      +S  SP+P         + VT KT R+++P N+PSVPIDGISFHHEE+ Q WK+V+Q+ + DEVN+SDKHQSC++I+
Subjt:  ESVPPPTTARTSNPLSP-----PQSTTSPEP---------QGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTII

Query:  DLI
        DLI
Subjt:  DLI

A0A5D3CSU3 Uncharacterized protein1.5e-1851.52Show/hide
Query:  ESVPPPT--------TARTSNPLS--PPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLI
        E +PPPT          R  +P S  PP+  T    + VT KT R+++P N+PSVPIDGISFHHEE+ Q WK+V+Q+ + D+VN+SDKHQSC++I+DLI
Subjt:  ESVPPPT--------TARTSNPLS--PPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLI

A0A5D3CUK9 Envelope-like protein1.5e-1854.95Show/hide
Query:  PPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSI
        PP+++     L P +  +    +  T K GR+++P NIPSVPIDGI FHHEEN Q WK+VVQR LADEVNVSDKHQSC++I+DLI +  ++
Subjt:  PPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSI

A0A5D3DJU3 Uncharacterized protein1.5e-1867.19Show/hide
Query:  VTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQV
        +TIKTGR+++P NIPSVPIDGISFH EE+ QRWKYVV R +ADEVN+SDKH SC++++ LI+++
Subjt:  VTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQV

A0A5D3DR14 Uncharacterized protein1.5e-1853.93Show/hide
Query:  VPPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQ
        V PP +A      +P +     + + +T KTG +++P NIPS+PIDGISFHHEE+ Q WK+V+QR +ADEVNVSDKHQSC++I+DLI +
Subjt:  VPPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCGTGAATCTGTCCCTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCGAGCCTCAGGGTGTCACCATCAAAACTGG
TAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATGGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCG
ATGAAGTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGCTCTATCTCGTACCATTCTGAATGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTCGTGAATCTGTCCCTCCTCCCACTACAGCTCGGACATCTAATCCTCTATCTCCACCTCAGTCCACGACTTCACCCGAGCCTCAGGGTGTCACCATCAAAACTGG
TAGACGTCGACTTCCACACAATATTCCTTCTGTTCCCATTGATGGCATATCTTTTCATCATGAAGAGAATGCTCAGAGGTGGAAGTATGTTGTACAACGACATTTGGCCG
ATGAAGTGAATGTCTCTGATAAGCATCAGTCCTGTGTGACCATTATAGACTTGATTAGTCAAGTTTGCTCTATCTCGTACCATTCTGAATGTTAGGTCGTTCTATCCAAG
Protein sequenceShow/hide protein sequence
MGRESVPPPTTARTSNPLSPPQSTTSPEPQGVTIKTGRRRLPHNIPSVPIDGISFHHEENAQRWKYVVQRHLADEVNVSDKHQSCVTIIDLISQVCSISYHSEC