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CSPI01G19540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G19540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy1-copia retrotransposon protein
Genome locationChr1:15153838..15154125
RNA-Seq ExpressionCSPI01G19540
SyntenyCSPI01G19540
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042492.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]8.5e-2367.37Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPAIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNKV+ DLSKLEL DG NY RWS+K+LIFFE+L+V+YVLT DP SDP  TI  P  NLE ST    IV+DQV +VS +DLEKY KD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPAIVIDQVKQVSTIDLEKYAKDKKTI

KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.4e-2264.95Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPA--IVIDQVKQVSTIDLEKYAKDKKTI
        MSI TSNK+LPDLSKLE  DG NY RWS+K+LIFF+QL+VDYVLTTD PS       + +S+LESST PPA   V DQVK+   IDLEKYAKD K +
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPA--IVIDQVKQVSTIDLEKYAKDKKTI

KAA0054462.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.1e-2265.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +SN ESST P     V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI

XP_008452160.1 PREDICTED: uncharacterized protein LOC103493265 [Cucumis melo]5.0e-2365.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPP--AIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +S+ ESST PP    V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPP--AIVIDQVKQVSTIDLEKYAKDKKTI

XP_008456453.1 PREDICTED: uncharacterized protein LOC103496396 [Cucumis melo]1.1e-2265.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +SN ESST P     V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI

TrEMBL top hitse value%identityAlignment
A0A1S3BUB5 uncharacterized protein LOC1034932652.4e-2365.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPP--AIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +S+ ESST PP    V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPP--AIVIDQVKQVSTIDLEKYAKDKKTI

A0A1S3C3Z1 uncharacterized protein LOC1034963965.3e-2365.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +SN ESST P     V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI

A0A5A7UFB4 Ty1-copia retrotransposon protein5.3e-2365.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +SN ESST P     V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSP--PAIVIDQVKQVSTIDLEKYAKDKKTI

A0A5D3D262 Ty1-copia retrotransposon protein2.4e-2365.98Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPP--AIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNK+LPDLSKLE  DG NY RWS+K+LIFFEQL+VDYVLTTD PS    T  + +S+ ESST PP    V DQVK+   ID EKYAKD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPP--AIVIDQVKQVSTIDLEKYAKDKKTI

A0A5D3DGZ1 Ty1-copia retrotransposon protein4.1e-2367.37Show/hide
Query:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPAIVIDQVKQVSTIDLEKYAKDKKTI
        MSIKTSNKV+ DLSKLEL DG NY RWS+K+LIFFE+L+V+YVLT DP SDP  TI  P  NLE ST    IV+DQV +VS +DLEKY KD KT+
Subjt:  MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPAIVIDQVKQVSTIDLEKYAKDKKTI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGATCAAAACCTCGAACAAAGTTCTACCAGATCTATCTAAACTCGAACTACAAGATGGAATAAATTACTGCCGATGGTCCAAAAAAGTATTGATCTTCTTCGAGCA
GTTGAAAGTCGACTATGTTCTTACCACCGATCCACCGTCTGATCCTCTAGTAACCATTCTAGCACCTACTTCTAATCTAGAATCATCCACGAGTCCTCCTGCCATTGTCA
TCGACCAAGTGAAGCAAGTATCCACAATTGATCTCGAGAAATACGCAAAGGACAAGAAGACAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGATCAAAACCTCGAACAAAGTTCTACCAGATCTATCTAAACTCGAACTACAAGATGGAATAAATTACTGCCGATGGTCCAAAAAAGTATTGATCTTCTTCGAGCA
GTTGAAAGTCGACTATGTTCTTACCACCGATCCACCGTCTGATCCTCTAGTAACCATTCTAGCACCTACTTCTAATCTAGAATCATCCACGAGTCCTCCTGCCATTGTCA
TCGACCAAGTGAAGCAAGTATCCACAATTGATCTCGAGAAATACGCAAAGGACAAGAAGACAATTTGA
Protein sequenceShow/hide protein sequence
MSIKTSNKVLPDLSKLELQDGINYCRWSKKVLIFFEQLKVDYVLTTDPPSDPLVTILAPTSNLESSTSPPAIVIDQVKQVSTIDLEKYAKDKKTI