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CSPI01G19910 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G19910
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationChr1:15709207..15712869
RNA-Seq ExpressionCSPI01G19910
SyntenyCSPI01G19910
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005682 - U5 snRNP (cellular component)
GO:0005685 - U1 snRNP (cellular component)
GO:0005686 - U2 snRNP (cellular component)
GO:0005687 - U4 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0071011 - precatalytic spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653153.1 hypothetical protein Csa_019571 [Cucumis sativus]9.5e-80100Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSI
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSI
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSI

Query:  SRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI
        SRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI
Subjt:  SRLLVIKGNLSTRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI

XP_004146294.1 small nuclear ribonucleoprotein E [Cucumis sativus]5.3e-3898.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNS K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

XP_008453647.1 PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis melo]1.2e-3797.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

XP_022921760.1 small nuclear ribonucleoprotein E-like isoform X2 [Cucurbita moschata]1.2e-3797.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

XP_038880616.1 small nuclear ribonucleoprotein E-like isoform X1 [Benincasa hispida]1.2e-3797.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

TrEMBL top hitse value%identityAlignment
A0A0A0LUF2 Small nuclear ribonucleoprotein E2.5e-3898.86Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNS K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

A0A1S3BXJ8 Small nuclear ribonucleoprotein E5.7e-3897.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

A0A1U8JTM2 Small nuclear ribonucleoprotein E1.3e-3796.59Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKS+K+LGRILLKGDNITLMMNS K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

A0A6J1E6Q3 Small nuclear ribonucleoprotein E5.7e-3897.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

A0A6J1JLU4 Small nuclear ribonucleoprotein E5.7e-3897.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

SwissProt top hitse value%identityAlignment
A1XQR9 Small nuclear ribonucleoprotein E6.7e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

A4FUI2 Small nuclear ribonucleoprotein E6.7e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

P62303 Small nuclear ribonucleoprotein E6.7e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

P62304 Small nuclear ribonucleoprotein E6.7e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

P62305 Small nuclear ribonucleoprotein E6.7e-2871.6Show/hide
Query:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN
        KVQ++M QPINLIFR+LQ+++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +
Subjt:  KVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMN

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein4.3e-3888.64Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

AT2G18740.2 Small nuclear ribonucleoprotein family protein9.6e-3088.73Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LG
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALG

AT4G30330.1 Small nuclear ribonucleoprotein family protein1.1e-3889.77Show/hide
Query:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK
        MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LGRILLKGDNITLMMN+ K
Subjt:  MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCK

AT5G48870.1 Small nuclear ribonucleoprotein family protein4.8e-0535.14Show/hide
Query:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--LGRILLKGDNITLMM
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL+D  E  +  + ++   L +ILL G+NI +++
Subjt:  PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKA--LGRILLKGDNITLMM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
GAGGATTGAAGGCCGAATCATTGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTC
TTCTTAAGGGAGACAATATTACACTAATGATGAACTCTTGCAAAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTG
AGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTT
AACCATTGTCTTCTGCTTGCAACTGGCAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGAGCACCAAAGTGCAGAGGATTATGACCCAGCCCATTAACTTGATATTCAGGTTTCTTCAAAGTAAAGCTCGTATTCAGATTTGGCTATTTGAGCAAAAGGACCT
GAGGATTGAAGGCCGAATCATTGGATTTGATGAGTACATGAATTTAGTGCTTGATGATGCTGAGGAAGTTAATGTCAAGAAAAAGAGTAAAAAGGCACTTGGGAGGATTC
TTCTTAAGGGAGACAATATTACACTAATGATGAACTCTTGCAAAGGGGAAGGTGAAGCAGATAAAAGGCAGACATCCATTAGTAGACTTCTGGTGATAAAAGGTAATCTG
AGCACCAGGGTGTGGGAAGAAAGATTGGACTACGAACGAAGCCAAGAGAAGGTGGTGGTGGCCGGTGGGACACACATGGGGTCAGGGAATCACGCCCTTCTAGCTCGTTT
AACCATTGTCTTCTGCTTGCAACTGGCAATATGA
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKALGRILLKGDNITLMMNSCKGEGEADKRQTSISRLLVIKGNL
STRVWEERLDYERSQEKVVVAGGTHMGSGNHALLARLTIVFCLQLAI