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CSPI01G20020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G20020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLPS-induced tumor necrosis factor alpha factor
Genome locationChr1:15799598..15799774
RNA-Seq ExpressionCSPI01G20020
SyntenyCSPI01G20020
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054811.1 hypothetical protein E6C27_scaffold437G00990 [Cucumis melo var. makuwa]8.1e-0866.67Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG
        MGDV   LK+A DCA AVA  ++VVMTVAP L PVVAPVM + TV TSVTGV++I G
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG

KAA0068093.1 LPS-induced tumor necrosis factor alpha factor [Cucumis melo var. makuwa]2.0e-0674.47Show/hide
Query:  ADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
        ADCAP VAT ++VVMTVAP L PVVAPVM AATV TS+TGV+ I GI
Subjt:  ADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI

KGN65426.1 hypothetical protein Csa_019847 [Cucumis sativus]2.5e-1798.28Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
        MGD GLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI

TYJ99647.1 hypothetical protein E5676_scaffold562G00240 [Cucumis melo var. makuwa]3.6e-0868.42Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG
        MGDV   LK+A DCA AVA  ++VVMTVAP L PVVAPVM A TV TSVTGV++I G
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG

TYK09492.1 hypothetical protein E5676_scaffold499G00920 [Cucumis melo var. makuwa]5.0e-1074.14Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
        M DV  ALK+AADCAPAVAT ++VVMTVAP L PVVAPVMVAA VVTSVT VL++ G+
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI

TrEMBL top hitse value%identityAlignment
A0A0A0LZP7 Uncharacterized protein1.2e-1798.28Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
        MGD GLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI

A0A5A7UMM6 Uncharacterized protein3.9e-0866.67Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG
        MGDV   LK+A DCA AVA  ++VVMTVAP L PVVAPVM + TV TSVTGV++I G
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG

A0A5D3BKI7 Uncharacterized protein1.8e-0868.42Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG
        MGDV   LK+A DCA AVA  ++VVMTVAP L PVVAPVM A TV TSVTGV++I G
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFG

A0A5D3CE01 Uncharacterized protein2.4e-1074.14Show/hide
Query:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
        M DV  ALK+AADCAPAVAT ++VVMTVAP L PVVAPVMVAA VVTSVT VL++ G+
Subjt:  MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI

A0A5D3DRF6 LPS-induced tumor necrosis factor alpha factor9.6e-0774.47Show/hide
Query:  ADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI
        ADCAP VAT ++VVMTVAP L PVVAPVM AATV TS+TGV+ I GI
Subjt:  ADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATGTTGGGCTTGCTTTGAAGTTGGCAGCTGATTGTGCTCCGGCGGTTGCAACGGCTTCAAATGTGGTTATGACGGTTGCACCATTTCTGGCCCCTGTTGTAGC
TCCTGTTATGGTTGCAGCCACTGTTGTTACGTCGGTCACCGGCGTTTTGAAGATTTTTGGAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATGTTGGGCTTGCTTTGAAGTTGGCAGCTGATTGTGCTCCGGCGGTTGCAACGGCTTCAAATGTGGTTATGACGGTTGCACCATTTCTGGCCCCTGTTGTAGC
TCCTGTTATGGTTGCAGCCACTGTTGTTACGTCGGTCACCGGCGTTTTGAAGATTTTTGGAATTTGA
Protein sequenceShow/hide protein sequence
MGDVGLALKLAADCAPAVATASNVVMTVAPFLAPVVAPVMVAATVVTSVTGVLKIFGI