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CSPI01G20310 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G20310
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReplication protein A 32 kDa subunit B
Genome locationChr1:15997330..15997957
RNA-Seq ExpressionCSPI01G20310
SyntenyCSPI01G20310
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058272.1 hypothetical protein E6C27_scaffold274G005980 [Cucumis melo var. makuwa]1.9e-9092.67Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPGLPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALG SSSPRRHVDR+SEFCR+KSNDES SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

KAG6589705.1 Replication protein A 32 kDa subunit B, partial [Cucurbita argyrosperma subsp. sororia]5.7e-4767.03Show/hide
Query:  DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVP-KQAPVKIWFW
        +H LH LSE PFSLLQAN+LFVHKILSRNSS GRSARLPAC LPGQ+PF WEAQPGLPK++PS+N  P   PP  +S  G SKTPH VP +Q   KIWFW
Subjt:  DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVP-KQAPVKIWFW

Query:  NKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIR
         K R+K R  VKKNGA G SSS RRHV+++SEF R KSNDE  SSSSLSCIS+S+SS+SSS++       RRR KL SLAK F+R
Subjt:  NKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIR

KGN65459.1 hypothetical protein Csa_020126 [Cucumis sativus]1.2e-9799.47Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKK+GALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

TYK11824.1 hypothetical protein E5676_scaffold152G00370 [Cucumis melo var. makuwa]1.2e-8992.15Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPGLPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALG SSSPRRHVDR+SEFCR+KSND S SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

XP_022987494.1 uncharacterized protein LOC111485037 [Cucurbita maxima]9.5e-5067.54Show/hide
Query:  DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPK-QAPVKIWFW
        DH LH  SE PFSLLQAN+LFVHKILSRNSS GRSARLPAC LPGQ+PF WEAQPGLPK++PS+N  P   PPP +   G SKTPH VPK Q   KIW W
Subjt:  DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPK-QAPVKIWFW

Query:  NKQRRKSRRAVKKNGALGSSSPRR-HVDRDSEFCRKKSNDESSSS---SSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
         K R+K R  VKKNGA GSSS  R HV+++SEFCR KSNDESSSS   SSLSCIS+S+SS+SSS++       RRR KL SLAK F+RWAF
Subjt:  NKQRRKSRRAVKKNGALGSSSPRR-HVDRDSEFCRKKSNDESSSS---SSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

TrEMBL top hitse value%identityAlignment
A0A0A0LWV3 Uncharacterized protein5.9e-9899.47Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKK+GALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

A0A2P5E1Z5 Uncharacterized protein3.8e-1237.88Show/hide
Query:  LHRLSEKP-FSLLQANQLFVHKILSRNSSFG---RSARLPACGLPGQVPFNWEAQPGLPKNQP-------SDNPPPVKLPPPSSSALGLSKTPHVVPKQA
        L + SEKP  S+LQAN+LFV KILSRNSS G    S  L       +VPF WE+QPG PK+ P       + +PP V LP P+  A G+   P  V    
Subjt:  LHRLSEKP-FSLLQANQLFVHKILSRNSSFG---RSARLPACGLPGQVPFNWEAQPGLPKNQP-------SDNPPPVKLPPPSSSALGLSKTPHVVPKQA

Query:  PVKIWFWNK-QRRKSRRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNN---RRRYKLGSLAKEFIRWAF
             FW K  +R+ ++ VKK    G S+  R +D  +           +SSS  SC S S  +++SS++S+  YNN   + R +L +LA   I+  F
Subjt:  PVKIWFWNK-QRRKSRRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNN---RRRYKLGSLAKEFIRWAF

A0A5A7UQX0 Uncharacterized protein9.1e-9192.67Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPGLPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALG SSSPRRHVDR+SEFCR+KSNDES SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

A0A5D3CKX4 Uncharacterized protein5.9e-9092.15Show/hide
Query:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI
        MAAKDHTLHRLSEKPFSLLQANQ FVHKILSRNSSFGRSARLPACGLPGQ+PFNWE QPGLPKNQPS+ PPP +LPPPSSSA GLSKTPHVVPKQAPVKI
Subjt:  MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKI

Query:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
        WFWNKQRRKSRRAVKKNGALG SSSPRRHVDR+SEFCR+KSND S SSSSLSCISYS+SSNSSSASSSDRYNNRRR KLGSLAKEFIRWAF
Subjt:  WFWNKQRRKSRRAVKKNGALG-SSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

A0A6J1JJ17 uncharacterized protein LOC1114850374.6e-5067.54Show/hide
Query:  DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPK-QAPVKIWFW
        DH LH  SE PFSLLQAN+LFVHKILSRNSS GRSARLPAC LPGQ+PF WEAQPGLPK++PS+N  P   PPP +   G SKTPH VPK Q   KIW W
Subjt:  DHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPK-QAPVKIWFW

Query:  NKQRRKSRRAVKKNGALGSSSPRR-HVDRDSEFCRKKSNDESSSS---SSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF
         K R+K R  VKKNGA GSSS  R HV+++SEFCR KSNDESSSS   SSLSCIS+S+SS+SSS++       RRR KL SLAK F+RWAF
Subjt:  NKQRRKSRRAVKKNGALGSSSPRR-HVDRDSEFCRKKSNDESSSS---SSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21695.1 hydroxyproline-rich glycoprotein family protein4.9e-0444.23Show/hide
Query:  PGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSS--ALGLSKTPHVVPKQAP
        PG VPF WE +PG+PK +P D+ P +  PPP +    L L  TP   P  +P
Subjt:  PGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSS--ALGLSKTPHVVPKQAP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTACTTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGG
CCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGGGAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTA
AACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGTCCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCG
AGGCGTGCAGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCACCGAGACGACATGTCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTC
CTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCCTCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAG
AGTTCATACGGTGGGCCTTTTAA
mRNA sequenceShow/hide mRNA sequence
CCTCATTATTTACCCTCAAATTTTTACTTTCAAAATATTCTCAACACAAAAAGCTATGGCAGCAAAAGATCACACTCTTCATCGTCTCTCTGAAAAACCCTTCTCATTAC
TTCAAGCAAATCAATTATTTGTCCACAAAATCCTTTCCAGAAACTCGTCATTTGGCCGCTCTGCCCGTCTCCCTGCCTGTGGCCTCCCCGGTCAAGTCCCTTTCAATTGG
GAAGCCCAGCCCGGCCTCCCTAAAAACCAACCTTCGGATAATCCCCCGCCAGTTAAACTCCCTCCGCCCTCATCCTCCGCCTTGGGCCTCTCCAAAACTCCTCACGTAGT
CCCTAAGCAAGCGCCGGTAAAGATTTGGTTTTGGAATAAGCAGAGGAGAAAATCGAGGCGTGCAGTTAAGAAAAACGGTGCGCTTGGATCGTCCTCACCGAGACGACATG
TCGATCGTGACAGTGAGTTTTGTAGAAAAAAATCAAACGACGAGTCGTCGTCGTCCTCGTCTTTGTCATGTATTTCTTATTCCATGTCTTCGAATTCTTCTTCGGCTTCC
TCGTCAGATCGTTACAACAACCGACGGCGCTACAAACTCGGTAGCCTTGCTAAAGAGTTCATACGGTGGGCCTTTTAA
Protein sequenceShow/hide protein sequence
MAAKDHTLHRLSEKPFSLLQANQLFVHKILSRNSSFGRSARLPACGLPGQVPFNWEAQPGLPKNQPSDNPPPVKLPPPSSSALGLSKTPHVVPKQAPVKIWFWNKQRRKS
RRAVKKNGALGSSSPRRHVDRDSEFCRKKSNDESSSSSSLSCISYSMSSNSSSASSSDRYNNRRRYKLGSLAKEFIRWAF