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CSPI01G20560 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G20560
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPHD domain-containing protein
Genome locationChr1:16223971..16227683
RNA-Seq ExpressionCSPI01G20560
SyntenyCSPI01G20560
Gene Ontology termsGO:0016310 - phosphorylation (biological process)
GO:0046274 - lignin catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0005507 - copper ion binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0052716 - hydroquinone:oxygen oxidoreductase activity (molecular function)
InterPro domainsIPR011124 - Zinc finger, CW-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK28579.1 PHD domain-containing protein [Cucumis melo var. makuwa]1.2e-7285.53Show/hide
Query:  RTFTWHDMEK------MHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILW
        R FTW    +       +  + DTDAIGEPLEMDSSESF MHEQSTNK CRLSTIGNWLQCQQV+DGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILW
Subjt:  RTFTWHDMEK------MHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILW

Query:  DPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        DPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTE+KP
Subjt:  DPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

XP_008453560.1 PREDICTED: uncharacterized protein LOC103494237 isoform X2 [Cucumis melo]3.6e-7295.65Show/hide
Query:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
        +DTDAIGEPLEMDSSESF MHEQSTNK CRLSTIGNWLQCQQV+DGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
Subjt:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ

Query:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        LKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTE+KP
Subjt:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

XP_011656989.1 uncharacterized protein LOC101212408 isoform X1 [Cucumis sativus]1.7e-7498.55Show/hide
Query:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
        +DTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQV KQ
Subjt:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ

Query:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
Subjt:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

XP_031741584.1 uncharacterized protein LOC101212408 isoform X2 [Cucumis sativus]1.7e-7498.55Show/hide
Query:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
        +DTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQV KQ
Subjt:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ

Query:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
Subjt:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

XP_038878482.1 uncharacterized protein LOC120070708 isoform X1 [Benincasa hispida]2.9e-6992.03Show/hide
Query:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
        +DTDA GEPLE+D SESF MHE+STNKPCRLSTIGNWLQCQQVIDG+GG NG ICGKWRRAPLFEVQTDDWECFCSILWDP HADCAVPQELETGQVLKQ
Subjt:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ

Query:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        LKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTEHKP
Subjt:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

TrEMBL top hitse value%identityAlignment
A0A0A0LWX9 CW-type domain-containing protein1.1e-9899.43Show/hide
Query:  MGYPHNYRKEKSKDNKNIAYNRTFTWHDMEKMHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLF
        MGYPHNYRKEKSKDNKNIAYNRTFTWHDMEKMHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLF
Subjt:  MGYPHNYRKEKSKDNKNIAYNRTFTWHDMEKMHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLF

Query:  EVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        EVQTDDWECFCSILWDPTHADCAVPQELETGQV KQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
Subjt:  EVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

A0A1S3BWJ2 uncharacterized protein LOC103494237 isoform X15.3e-6984.08Show/hide
Query:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ----------
        +DTDAIGEPLEMDSSESF MHEQSTNK CRLSTIGNWLQCQQV+DGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ          
Subjt:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ----------

Query:  ---------ELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
                 ELETGQVLKQLKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTE+KP
Subjt:  ---------ELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

A0A1S3BXC2 uncharacterized protein LOC103494237 isoform X21.8e-7295.65Show/hide
Query:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
        +DTDAIGEPLEMDSSESF MHEQSTNK CRLSTIGNWLQCQQV+DGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ
Subjt:  NDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLKQ

Query:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        LKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTE+KP
Subjt:  LKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

A0A5A7USR9 Tyrosine-protein kinase BAZ1B1.4e-6983.33Show/hide
Query:  MHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ-----
        MHA  +DTDAIGEPLEMDSSESF MHEQSTNK CRLSTIGNWLQCQQV+DGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ     
Subjt:  MHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQ-----

Query:  --------------ELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
                      ELETGQVLKQLKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTE+KP
Subjt:  --------------ELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

A0A5D3DYX2 PHD domain-containing protein6.0e-7385.53Show/hide
Query:  RTFTWHDMEK------MHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILW
        R FTW    +       +  + DTDAIGEPLEMDSSESF MHEQSTNK CRLSTIGNWLQCQQV+DGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILW
Subjt:  RTFTWHDMEK------MHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILW

Query:  DPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP
        DPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDE KSRSDVQNLTEDTE+KP
Subjt:  DPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G19260.1 RING/FYVE/PHD zinc finger superfamily protein2.7e-3353.85Show/hide
Query:  INDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLK
        ++DT  +GEPLE+  SE     +++ N   + S + NWLQC++        NG ICGKWRRAP  EVQT DWECFC   WDP+ ADCAVPQELET ++LK
Subjt:  INDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECFCSILWDPTHADCAVPQELETGQVLK

Query:  QLKYIEMLRPRLASKRRKL-DEVKSRSDVQ
        QLKYI+MLRPR  +K+RKL  + +SRS ++
Subjt:  QLKYIEMLRPRLASKRRKL-DEVKSRSDVQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTACCCCCATAATTATCGCAAAGAGAAGAGTAAAGATAACAAAAATATTGCTTACAATAGAACCTTTACTTGGCATGATATGGAGAAAATGCATGCTAGGATTAA
TGATACTGATGCCATCGGAGAGCCACTGGAAATGGATTCTTCAGAATCTTTTCGTATGCATGAGCAGAGTACCAATAAACCTTGTAGATTGAGCACCATTGGAAATTGGC
TTCAATGTCAACAAGTTATAGATGGAGTGGGTGGTGGTAATGGAGGTATATGTGGCAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTGATGACTGGGAATGCTTC
TGCTCTATCCTCTGGGATCCGACACATGCAGATTGTGCTGTACCTCAGGAATTGGAGACGGGTCAAGTTTTAAAGCAGTTGAAGTACATTGAGATGTTGAGGCCTCGGTT
AGCTTCCAAAAGACGGAAATTGGATGAGGTGAAGAGCAGAAGTGATGTGCAGAACCTTACAGAGGATACAGAACACAAACCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCTACCCCCATAATTATCGCAAAGAGAAGAGTAAAGATAACAAAAATATTGCTTACAATAGAACCTTTACTTGGCATGATATGGAGAAAATGCATGCTAGGATTAA
TGATACTGATGCCATCGGAGAGCCACTGGAAATGGATTCTTCAGAATCTTTTCGTATGCATGAGCAGAGTACCAATAAACCTTGTAGATTGAGCACCATTGGAAATTGGC
TTCAATGTCAACAAGTTATAGATGGAGTGGGTGGTGGTAATGGAGGTATATGTGGCAAGTGGCGCAGGGCTCCTCTTTTTGAAGTCCAAACTGATGACTGGGAATGCTTC
TGCTCTATCCTCTGGGATCCGACACATGCAGATTGTGCTGTACCTCAGGAATTGGAGACGGGTCAAGTTTTAAAGCAGTTGAAGTACATTGAGATGTTGAGGCCTCGGTT
AGCTTCCAAAAGACGGAAATTGGATGAGGTGAAGAGCAGAAGTGATGTGCAGAACCTTACAGAGGATACAGAACACAAACCTTGATATGGTGAGAACTGCTTGATAGTAT
TCAAGTGCCGTAACTCCATATTTCTTACAAAATCAAGTCATTCAGATTAAAATTGGGTCTTATTTTCTCTACCTTAAGAAGCATTGTAATAGTAATATCTTGTATGTTGC
AAATGAAGGACCAAATATGATGTGTGAGCCATTTACCTCTTCTGTTGGCTTTTTGTCTCTTTTT
Protein sequenceShow/hide protein sequence
MGYPHNYRKEKSKDNKNIAYNRTFTWHDMEKMHARINDTDAIGEPLEMDSSESFRMHEQSTNKPCRLSTIGNWLQCQQVIDGVGGGNGGICGKWRRAPLFEVQTDDWECF
CSILWDPTHADCAVPQELETGQVLKQLKYIEMLRPRLASKRRKLDEVKSRSDVQNLTEDTEHKP