; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G20900 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G20900
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotransposable element Tf2
Genome locationChr1:16492541..16493008
RNA-Seq ExpressionCSPI01G20900
SyntenyCSPI01G20900
Gene Ontology termsGO:1901800 - positive regulation of proteasomal protein catabolic process (biological process)
GO:0000502 - proteasome complex (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0036402 - proteasome-activating ATPase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032918.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]4.7e-3173.45Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP  RQ P N+RQPP NN N +  +PPQ+VASSSGTT  R + P+QSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI S+ LLR
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PTTPNK  AS
Subjt:  PSRPTTPNKCVAS
KAA0040832.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-3276.11Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP GRQ P NQRQP  N+ N NPQRPPQ+VA+SSGTT  R KSPAQSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI  + LL 
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PT PNK  AS
Subjt:  PSRPTTPNKCVAS
KAA0050443.1 polyprotein [Cucumis melo var. makuwa]1.4e-3072.17Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP GRQ P NQRQ P +N N +PQRPPQT+ SSS TT  +GK   QSS PS MSA+NYAMDLQFEQVSRR QGSA R LTIQ+DSSSLPPI S+ LLR
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVASTT
        PS PTTPNK  AS T
Subjt:  PSRPTTPNKCVASTT
TYK17808.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]1.9e-3276.11Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP GRQ P NQRQP  N+ N NPQRPPQ+VA+SSGTT  R KSPAQSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI  + LL 
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PT PNK  AS
Subjt:  PSRPTTPNKCVAS
TYK28082.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa]6.2e-3173.45Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP  RQ P N+RQPP NN N +  +PPQ+VASSSGTT  R + P+QSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI S+ LLR
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PTTPNK  AS
Subjt:  PSRPTTPNKCVAS
TrEMBL top hitse value%identityAlignment
A0A5A7SQU5 Retrotransposable element Tf22.3e-3173.45Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP  RQ P N+RQPP NN N +  +PPQ+VASSSGTT  R + P+QSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI S+ LLR
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PTTPNK  AS
Subjt:  PSRPTTPNKCVAS
A0A5A7TBK1 Retrotransposable element Tf29.3e-3376.11Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP GRQ P NQRQP  N+ N NPQRPPQ+VA+SSGTT  R KSPAQSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI  + LL 
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PT PNK  AS
Subjt:  PSRPTTPNKCVAS
A0A5A7U3G5 Polyprotein6.6e-3172.17Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP GRQ P NQRQ P +N N +PQRPPQT+ SSS TT  +GK   QSS PS MSA+NYAMDLQFEQVSRR QGSA R LTIQ+DSSSLPPI S+ LLR
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVASTT
        PS PTTPNK  AS T
Subjt:  PSRPTTPNKCVASTT
A0A5D3D2Q6 Retrotransposable element Tf29.3e-3376.11Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP GRQ P NQRQP  N+ N NPQRPPQ+VA+SSGTT  R KSPAQSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI  + LL 
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PT PNK  AS
Subjt:  PSRPTTPNKCVAS
A0A5D3DX32 Retrotransposable element Tf23.0e-3173.45Show/hide
Query:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR
        MEPP  RQ P N+RQPP NN N +  +PPQ+VASSSGTT  R + P+QSS PSPMSA+NYAMDLQFEQVSRRRQGSA R LTIQ+DSSSLPPI S+ LLR
Subjt:  MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLR

Query:  PSRPTTPNKCVAS
        PS PTTPNK  AS
Subjt:  PSRPTTPNKCVAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAACCTCCTTCCGGCCGGCAATGGCCATCCAACCAGCGACAACCGCCGCTAAATAACCCAAACAAAAATCCTCAAAGACCACCTCAAACAGTAGCTTCCTCTTCAGG
AACTACTTCTCCTAGGGGAAAATCGCCGGCTCAATCATCTACACCGTCTCCGATGAGTGCAAAAAACTATGCCATGGATTTACAATTTGAGCAAGTATCCAGGCGTCGTC
AAGGCTCTGCTAACAGAGCATTGACAATCCAAACAGACTCTTCAAGTCTTCCCCCCATATCGTCAAGCACATTGTTGCGACCCTCTAGGCCGACAACTCCAAACAAGTGT
GTCGCATCAACAACTCCTCCTCAAGATCTGCAATTATGCGAAATCCATCCTCATATTCCCAGATTGTACGACCAAAAGTCTTCCAGCCAAGACCACCAATTACTGGTTGT
TTCACCAAAACAACAATGGTGGATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAACCTCCTTCCGGCCGGCAATGGCCATCCAACCAGCGACAACCGCCGCTAAATAACCCAAACAAAAATCCTCAAAGACCACCTCAAACAGTAGCTTCCTCTTCAGG
AACTACTTCTCCTAGGGGAAAATCGCCGGCTCAATCATCTACACCGTCTCCGATGAGTGCAAAAAACTATGCCATGGATTTACAATTTGAGCAAGTATCCAGGCGTCGTC
AAGGCTCTGCTAACAGAGCATTGACAATCCAAACAGACTCTTCAAGTCTTCCCCCCATATCGTCAAGCACATTGTTGCGACCCTCTAGGCCGACAACTCCAAACAAGTGT
GTCGCATCAACAACTCCTCCTCAAGATCTGCAATTATGCGAAATCCATCCTCATATTCCCAGATTGTACGACCAAAAGTCTTCCAGCCAAGACCACCAATTACTGGTTGT
TTCACCAAAACAACAATGGTGGATTTGA
Protein sequenceShow/hide protein sequence
MEPPSGRQWPSNQRQPPLNNPNKNPQRPPQTVASSSGTTSPRGKSPAQSSTPSPMSAKNYAMDLQFEQVSRRRQGSANRALTIQTDSSSLPPISSSTLLRPSRPTTPNKC
VASTTPPQDLQLCEIHPHIPRLYDQKSSSQDHQLLVVSPKQQWWI