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CSPI01G20960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G20960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr1:16518908..16519414
RNA-Seq ExpressionCSPI01G20960
SyntenyCSPI01G20960
Gene Ontology termsGO:0006488 - dolichol-linked oligosaccharide biosynthetic process (biological process)
GO:0007034 - vacuolar transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005768 - endosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037155.1 peroxidase 64 [Cucumis melo var. makuwa]2.7e-6471.34Show/hide
Query:  GYLIECRTLEAHIAEIEP---EESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYL+ECR LEA +  +E    EE+NN PE +   L +YNDVF+W + LPPRR IEHHIH++ G +P+NVRPY YAFQQK EMEKLVDEM++SGII+P  S
Subjt:  GYLIECRTLEAHIAEIEP---EESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSS VLLVKK DGSWRFC++YRALNN T+PD FPIPV+EELFDELNGANLFSKIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

KAA0057179.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-6571.95Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ND+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

KAA0062868.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-6571.34Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

KAA0068193.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-6571.34Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

TYJ96875.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.4e-6571.34Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

TrEMBL top hitse value%identityAlignment
A0A5A7T6Q1 Peroxidase 641.3e-6471.34Show/hide
Query:  GYLIECRTLEAHIAEIEP---EESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYL+ECR LEA +  +E    EE+NN PE +   L +YNDVF+W + LPPRR IEHHIH++ G +P+NVRPY YAFQQK EMEKLVDEM++SGII+P  S
Subjt:  GYLIECRTLEAHIAEIEP---EESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSS VLLVKK DGSWRFC++YRALNN T+PD FPIPV+EELFDELNGANLFSKIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

A0A5A7V5H5 Ty3/gypsy retrotransposon protein2.6e-6571.34Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

A0A5A7VJA0 Ty3/gypsy retrotransposon protein2.6e-6571.34Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

A0A5D3BEL2 Ty3/gypsy retrotransposon protein2.6e-6571.34Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ D+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

A0A5D3D5G0 Ty3/gypsy retrotransposon protein5.3e-6671.95Show/hide
Query:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS
        GYLIECR++   IAE   +  EE   I E +L  L Q+ND+F+WP++LPPRR IEH IH++ G +P+NVRPYRYA+ QKEEME+LV+EML SGIIRPS S
Subjt:  GYLIECRTLEAHIAE---IEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTS

Query:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PYSSPVLLVKKKDGSWRFCVDYRALNN+T+PD FPIPVVEELFDEL GA+LF+KIDLKAGYHQ+
Subjt:  PYSSPVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.67.9e-1934.38Show/hide
Query:  LEAHIAEIEPEESNNIPESILTALKQYNDV-FDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLV-
        LE+ +  +E   +N   + +   L++Y+D+ +    +L      +H I+ +      +   Y  A++Q  E+E  + +ML  GIIR S SPY+SP+ +V 
Subjt:  LEAHIAEIEPEESNNIPESILTALKQYNDV-FDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLV-

Query:  KKKDGS----WRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQLE
        KK+D S    +R  +DYR LN IT+ D  PIP ++E+  +L   N F+ IDL  G+HQ+E
Subjt:  KKKDGS----WRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQLE

P20825 Retrovirus-related Pol polyprotein from transposon 2976.7e-1842.86Show/hide
Query:  PMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKD-----GSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAG
        P+  + Y  A   + E+E  V EML  G+IR S SPY+SP  +V KK        +R  +DYR LN ITIPD +PIP ++E+  +L     F+ IDL  G
Subjt:  PMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKD-----GSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAG

Query:  YHQLE
        +HQ+E
Subjt:  YHQLE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.3e-2535.62Show/hide
Query:  IAEIEPEESNNIPESILTAL-----KQYNDVFDWPKELPPRR------DIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSS
        I  +EP  +++  +     L     ++Y ++     +LPPR        ++H I ++ GA    ++PY    + ++E+ K+V ++L +  I PS SP SS
Subjt:  IAEIEPEESNNIPESILTAL-----KQYNDVFDWPKELPPRR------DIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSS

Query:  PVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PV+LV KKDG++R CVDYR LN  TI D FP+P ++ L   +  A +F+ +DL +GYHQ+
Subjt:  PVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus5.5e-2040.95Show/hide
Query:  DPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKK-----DGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKA
        DP+  + Y Y    + E+E+ +DE+L  GIIRPS SPY+SP+ +V KK     +  +R  VD++ LN +TIPD +PIP +      L  A  F+ +DL +
Subjt:  DPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKK-----DGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKA

Query:  GYHQL
        G+HQ+
Subjt:  GYHQL

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.3e-2535.62Show/hide
Query:  IAEIEPEESNNIPESILTAL-----KQYNDVFDWPKELPPRR------DIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSS
        I  +EP  +++  +     L     ++Y ++     +LPPR        ++H I ++ GA    ++PY    + ++E+ K+V ++L +  I PS SP SS
Subjt:  IAEIEPEESNNIPESILTAL-----KQYNDVFDWPKELPPRR------DIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSS

Query:  PVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL
        PV+LV KKDG++R CVDYR LN  TI D FP+P ++ L   +  A +F+ +DL +GYHQ+
Subjt:  PVLLVKKKDGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQL

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.6e-0656.41Show/hide
Query:  QKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSW
        ++  ++  + EML + II+PS SPYSSPVLLV+KKDG W
Subjt:  QKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKKDGSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATACTTGATTGAGTGCAGAACCTTGGAAGCCCACATAGCCGAGATAGAGCCAGAAGAGAGTAATAACATACCTGAGAGCATACTAACAGCCCTGAAACAGTATAA
TGACGTTTTCGATTGGCCCAAAGAATTACCTCCAAGAAGGGATATCGAACATCATATACACGTAAGGGGAGGGGCAGATCCGATGAATGTCAGGCCCTATCGGTATGCTT
TTCAGCAGAAGGAGGAAATGGAAAAATTGGTGGACGAAATGCTAACCTCAGGAATTATCCGTCCCAGCACAAGCCCCTACTCAAGCCCCGTATTATTGGTCAAGAAGAAG
GACGGAAGTTGGCGATTCTGCGTGGACTACAGGGCACTCAATAACATAACTATTCCAGATATGTTTCCTATCCCTGTTGTGGAAGAACTGTTCGACGAGCTAAATGGTGC
AAATCTATTCTCCAAAATTGACTTGAAAGCGGGATATCATCAATTAGAATGTGCAGTCAAGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGATACTTGATTGAGTGCAGAACCTTGGAAGCCCACATAGCCGAGATAGAGCCAGAAGAGAGTAATAACATACCTGAGAGCATACTAACAGCCCTGAAACAGTATAA
TGACGTTTTCGATTGGCCCAAAGAATTACCTCCAAGAAGGGATATCGAACATCATATACACGTAAGGGGAGGGGCAGATCCGATGAATGTCAGGCCCTATCGGTATGCTT
TTCAGCAGAAGGAGGAAATGGAAAAATTGGTGGACGAAATGCTAACCTCAGGAATTATCCGTCCCAGCACAAGCCCCTACTCAAGCCCCGTATTATTGGTCAAGAAGAAG
GACGGAAGTTGGCGATTCTGCGTGGACTACAGGGCACTCAATAACATAACTATTCCAGATATGTTTCCTATCCCTGTTGTGGAAGAACTGTTCGACGAGCTAAATGGTGC
AAATCTATTCTCCAAAATTGACTTGAAAGCGGGATATCATCAATTAGAATGTGCAGTCAAGATATAG
Protein sequenceShow/hide protein sequence
MGYLIECRTLEAHIAEIEPEESNNIPESILTALKQYNDVFDWPKELPPRRDIEHHIHVRGGADPMNVRPYRYAFQQKEEMEKLVDEMLTSGIIRPSTSPYSSPVLLVKKK
DGSWRFCVDYRALNNITIPDMFPIPVVEELFDELNGANLFSKIDLKAGYHQLECAVKI