; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G21160 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G21160
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr1:16695258..16697350
RNA-Seq ExpressionCSPI01G21160
SyntenyCSPI01G21160
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN66637.1 hypothetical protein VITISV_011340 [Vitis vinifera]3.4e-18552.41Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
           ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

RVW43863.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]9.7e-18855.09Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR+ EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQSNKK------RKFFGEE---VDEVSDGVANIDLCAVILECNMV-DNSKEWWVDTGATRHICANKDMFTSYVPVE-----------
           ++KAN VE+  QS+K       +K   +E   +D+++  V++IDL AV+ E N+V  N KEWW+DTGATRH+C++K MF+++ P+E           
Subjt:  NTMDSKANIVENRSQSNKK------RKFFGEE---VDEVSDGVANIDLCAVILECNMV-DNSKEWWVDTGATRHICANKDMFTSYVPVE-----------

Query:  -----GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF
             GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNKF+LSK+ MY+GKGY+SDG++KLNV+ ++ KS +NK ST  Y++ES 
Subjt:  -----GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF

Query:  -VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKD
         +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHSDICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKD
Subjt:  -VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKD

Query:  EAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRI
        EAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ERKNR LKEMMNA LISS LPQN+W EA+LTANYLLN++
Subjt:  EAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRI

Query:  PHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  PHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

RVX00859.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]4.5e-18552.41Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
           ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

RVX14679.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]1.2e-18552.55Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
        N  ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

RVX15136.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]2.0e-18552.55Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E VG+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
           ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

TrEMBL top hitse value%identityAlignment
A0A438E836 Retrovirus-related Pol polyprotein from transposon TNT 1-944.7e-18855.09Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR+ EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQSNKK------RKFFGEE---VDEVSDGVANIDLCAVILECNMV-DNSKEWWVDTGATRHICANKDMFTSYVPVE-----------
           ++KAN VE+  QS+K       +K   +E   +D+++  V++IDL AV+ E N+V  N KEWW+DTGATRH+C++K MF+++ P+E           
Subjt:  NTMDSKANIVENRSQSNKK------RKFFGEE---VDEVSDGVANIDLCAVILECNMV-DNSKEWWVDTGATRHICANKDMFTSYVPVE-----------

Query:  -----GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF
             GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNKF+LSK+ MY+GKGY+SDG++KLNV+ ++ KS +NK ST  Y++ES 
Subjt:  -----GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF

Query:  -VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKD
         +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHSDICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKD
Subjt:  -VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKD

Query:  EAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRI
        EAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ERKNR LKEMMNA LISS LPQN+W EA+LTANYLLN++
Subjt:  EAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRI

Query:  PHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  PHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

A0A438IVT6 Retrovirus-related Pol polyprotein from transposon TNT 1-942.2e-18552.41Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
           ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

A0A438K0G8 Retrovirus-related Pol polyprotein from transposon TNT 1-945.7e-18652.55Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
        N  ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

A0A438K1P8 Retrovirus-related Pol polyprotein from transposon TNT 1-949.8e-18652.55Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E VG+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
           ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

A5AEN5 Uncharacterized protein1.7e-18552.41Show/hide
Query:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT
        V+ G+KPEKF G++FKRWQQKMLFYLTTLNLA+FLTEDAP L E   D                                  +KK          +KYKT
Subjt:  VAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSD---------------------------------KEKKL---------KKYKT

Query:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD
        E  G+KKF+VG+FLDYKMVD KTV++QVQE+QVIL++I+AE M LSE+FQ                             +L+++L IEE+NR++EK    
Subjt:  EVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYAENMTLSESFQ-----------------------------ELVVQLGIEENNRKAEKCTMD

Query:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK
           ++KAN VE+   S                    +KK KF G+                           +D+++  V +IDL AV+ E N+V  N K
Subjt:  NTMDSKANIVENRSQS--------------------NKKRKFFGE--------------------------EVDEVSDGVANIDLCAVILECNMV-DNSK

Query:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY
        EWW+DTGATRH+C++K MF+++ P+E                GQGKVILKMTSGKELTL N L+VP IRKNLVSGSLL+ +GF+LVF SNK VLSK+ MY
Subjt:  EWWVDTGATRHICANKDMFTSYVPVE----------------GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMY

Query:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS
        +GKGY+SDG++KLNV+T++ KS +NK ST  Y++ES  +WHGRLGHVN+++L+RLIN+N IP F  ++NH CE C              R T+PL+LIHS
Subjt:  IGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMC--------------RITKPLELIHS

Query:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        DICDLKFVQTR G KYFITF+DDST+YCYVYLLKSKDEAIE F LYK EVENQL+ KIK +RSDRGGEY  PF   C++HGIIH+TTAPYS QSN + ER
Subjt:  DICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD
        KNR LKEMMNA LISS LPQN+W EA+LTANYLLN++P KK++  PYE WKGRKPSY +L++WGCL KV +P PK V IG KT+D
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVD

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.0e-3527.04Show/hide
Query:  IVENRSQSNKKRKFFGEEVDEVSDGVA----NIDLCAVILECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVEGQGKV---------------ILKMT
        I+ N+++ N+K     +     S G+A     ++  +V+  C  V       +D+GA+ H+  ++ ++T  V V    K+               I+++ 
Subjt:  IVENRSQSNKKRKFFGEEVDEVSDGVA----NIDLCAVILECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVEGQGKV---------------ILKMT

Query:  SGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSL
        +  E+TL + L       NL+S   L + G  + F  +   +SKN + + K   + G+  LN + V++       S  A    +F +WH R GH++   L
Subjt:  SGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESF-VWHGRLGHVNFNSL

Query:  QRLINMNLIPKFTFDTN--HGCEMC--------------------RITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFK
          +   N+    +   N    CE+C                     I +PL ++HSD+C      T   K YF+ F+D  T YC  YL+K K +   +F+
Subjt:  QRLINMNLIPKFTFDTN--HGCEMC--------------------RITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFK

Query:  LYKKEVENQLSTKIKAIRSDRGGEY-GPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHK---
         +  + E   + K+  +  D G EY      QFC + GI +  T P++ Q N + ER  R + E     +  + L ++ W EA+LTA YL+NRIP +   
Subjt:  LYKKEVENQLSTKIKAIRSDRGGEY-GPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHK---

Query:  KSQNIPYEKWKGRKPSYKFLKVWGCLTKV
         S   PYE W  +KP  K L+V+G    V
Subjt:  KSQNIPYEKWKGRKPSYKFLKVWGCLTKV

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-949.7e-5833.25Show/hide
Query:  EWWVDTGATRHICANKDMF---------------TSYVPVEGQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYI
        EW VDT A+ H    +D+F               TSY  + G G + +K   G  L L +  HVP++R NL+SG  L ++G++  F + K+ L+K  + I
Subjt:  EWWVDTGATRHICANKDMF---------------TSYVPVEGQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYI

Query:  GKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMCRITKP---------------LELIHSD
         KG     L++ N      +    +++     +   +WH R+GH++   LQ L   +LI      T   C+ C   K                L+L++SD
Subjt:  GKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQRLINMNLIPKFTFDTNHGCEMCRITKP---------------LELIHSD

Query:  ICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEY-GPPFEQFCSEHGIIHQTTAPYSSQSNEIVER
        +C    +++  G KYF+TFIDD++R  +VY+LK+KD+  +VF+ +   VE +   K+K +RSD GGEY    FE++CS HGI H+ T P + Q N + ER
Subjt:  ICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEY-GPPFEQFCSEHGIIHQTTAPYSSQSNEIVER

Query:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPH-KKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTV
         NR + E + + L  + LP++ W EA+ TA YL+NR P    +  IP   W  ++ SY  LKV+GC     +PK +   +  K++
Subjt:  KNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPH-KKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTV

Q12491 Transposon Ty2-B Gag-Pol polyprotein5.8e-1824.55Show/hide
Query:  VPVEGQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEM-----------YIGKGYL-SDGLFKLNVLTVVHKSIINK
        +P+   G +     +G + ++  ALH PNI  +L+S S L+       F  N    S   +           ++ K YL    + KL +  V     +NK
Subjt:  VPVEGQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEM-----------YIGKGYL-SDGLFKLNVLTVVHKSIINK

Query:  VSTLAYIVESFVWHGRLGHVNFNSLQRLINMNLIP-------KFTFDTNHGCEMCRITK-------------------PLELIHSDICDLKFVQTRCGKK
                   + H  LGH NF S+Q+ +  N +        +++  + + C  C I K                   P + +H+DI        +    
Subjt:  VSTLAYIVESFVWHGRLGHVNFNSLQRLINMNLIP-------KFTFDTNHGCEMCRITK-------------------PLELIHSDICDLKFVQTRCGKK

Query:  YFITFIDDSTRYCYVYLL--KSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEY-GPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNAT
        YFI+F D+ TR+ +VY L  + ++  + VF      ++NQ + ++  I+ DRG EY      +F +  GI    T    S+++ + ER NR L       
Subjt:  YFITFIDDSTRYCYVYLL--KSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEY-GPPFEQFCSEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNAT

Query:  LISSGLPQNLWEEALLTANYLLNRIPHKKS
        L  SGLP +LW  A+  +  + N +   K+
Subjt:  LISSGLPQNLWEEALLTANYLLNRIPHKKS

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE14.7e-3629.97Show/hide
Query:  NSKEWWVDTGATRHICANKDMFTSYVPVEGQGKVILK---------------MTSGKELTLNNALHVPNIRKNLVS-GSLLSKNGFKLVFVSNKFVLS--
        +S  W +D+GAT HI ++ +  + + P  G   V++                 T  + L L+N L+VPNI KNL+S   L + NG  + F    F +   
Subjt:  NSKEWWVDTGATRHICANKDMFTSYVPVEGQGKVILK---------------MTSGKELTLNNALHVPNIRKNLVS-GSLLSKNGFKLVFVSNKFVLS--

Query:  KNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQRLIN------MNLIPKFTFDTNHGCEMCRI-------------
           + + +G   D L++  + +    S+    S+ A       WH RLGH   + L  +I+      +N   KF       C  C I             
Subjt:  KNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQRLIN------MNLIPKFTFDTNHGCEMCRI-------------

Query:  --TKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAP
          T+PLE I+SD+     + +    +Y++ F+D  TRY ++Y LK K +  E F  +K  +EN+  T+I    SD GGE+   +E F S+HGI H T+ P
Subjt:  --TKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQTTAP

Query:  YSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQ-NIPYEKWKGRKPSYKFLKVWGC
        ++ + N + ERK+R + E     L  + +P+  W  A   A YL+NR+P    Q   P++K  G  P+Y  L+V+GC
Subjt:  YSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQ-NIPYEKWKGRKPSYKFLKVWGC

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.5e-3729.13Show/hide
Query:  LECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVEGQGKVILK---------------MTSGKELTLNNALHVPNIRKNLVS-GSLLSKNGFKLVFVSN
        L  N   N+  W +D+GAT HI ++ +  + + P  G   V++                 TS + L LN  L+VPNI KNL+S   L + N   + F   
Subjt:  LECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVEGQGKVILK---------------MTSGKELTLNNALHVPNIRKNLVS-GSLLSKNGFKLVFVSN

Query:  KFVLS--KNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQRLINMNLIPKFTFDTNH---GCEMCRI---------
         F +      + + +G   D L++     +     ++  ++         WH RLGH +   L  +I+ + +P    + +H    C  C I         
Subjt:  KFVLS--KNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQRLINMNLIPKFTFDTNH---GCEMCRI---------

Query:  ------TKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQ
              +KPLE I+SD+     +      +Y++ F+D  TRY ++Y LK K +  + F ++K  VEN+  T+I  + SD GGE+      + S+HGI H 
Subjt:  ------TKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFCSEHGIIHQ

Query:  TTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQ-NIPYEKWKGRKPSYKFLKVWGC
        T+ P++ + N + ERK+R + EM    L  + +P+  W  A   A YL+NR+P    Q   P++K  G+ P+Y+ LKV+GC
Subjt:  TTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQ-NIPYEKWKGRKPSYKFLKVWGC

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTTAACAAACTTTAATTCTCCTATAACTGGTGTTGCCCATGGGAAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTCTA
TCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGATGCTCCCATTTTACCTGAGGGGGGATCTGACAAAGAAAAAAAACTTAAGAAATACAAAACTGAAGTTGTTG
GTTCAAAGAAATTTATCGTTGGAAAATTTCTGGATTACAAAATGGTGGACTTCAAAACTGTAATCAATCAGGTTCAGGAAATTCAGGTAATTCTATATGATATATATGCT
GAGAATATGACTTTGAGTGAGTCTTTTCAGGAACTTGTGGTCCAACTTGGGATTGAAGAAAATAATAGAAAGGCAGAAAAGTGTACTATGGATAATACAATGGATTCCAA
GGCCAACATTGTGGAAAATAGATCACAAAGTAACAAGAAAAGGAAGTTTTTTGGTGAAGAAGTTGATGAAGTATCAGATGGTGTTGCAAATATTGACCTTTGTGCAGTCA
TTTTAGAATGCAACATGGTGGACAATTCGAAGGAGTGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCAGTTGAA
GGACAAGGCAAAGTGATTCTTAAGATGACCTCTGGCAAGGAACTCACTCTCAACAATGCGCTTCATGTTCCTAACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAG
TAAGAATGGCTTTAAGTTGGTTTTTGTATCTAATAAGTTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGGGTTATTTGAGTGATGGTCTATTTAAATTAAATGTAC
TCACAGTTGTACACAAAAGTATTATTAATAAGGTATCTACTCTTGCTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTTAATTTTAATTCTTTGCAA
AGACTAATTAATATGAACTTGATTCCAAAATTCACTTTTGACACAAATCATGGATGTGAGATGTGTAGAATTACCAAACCTTTAGAGTTAATTCATAGTGATATTTGTGA
CTTGAAATTTGTGCAAACTAGATGTGGAAAAAAGTATTTTATTACTTTTATCGATGATAGCACAAGATATTGTTATGTTTATCTGCTAAAAAGCAAAGATGAGGCAATTG
AAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCACAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAACAATTTTGT
TCAGAACATGGCATTATTCACCAAACTACAGCTCCTTACTCATCTCAATCGAATGAAATTGTTGAACGAAAAAACCGACCACTTAAGGAAATGATGAACGCAACGCTTAT
AAGTTCAGGTTTACCCCAAAATTTGTGGGAAGAAGCTTTGTTAACAGCAAATTATTTATTAAACAGAATTCCTCATAAGAAGTCACAAAATATTCCTTATGAAAAGTGGA
AAGGAAGAAAACCTTCATATAAATTCTTAAAAGTATGGGGGTGCCTAACAAAGGTTGTCATGCCTAAACCTAAAATGGTTAACATTGGAACAAAAACTGTTGATTGGTTA
TGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTTTAACAAACTTTAATTCTCCTATAACTGGTGTTGCCCATGGGAAGAAACCTGAAAAATTTGGTGGTGTTGATTTCAAACGTTGGCAACAAAAAATGTTGTTCTA
TCTCACCACTTTAAATTTGGCAAAGTTTCTCACAGAGGATGCTCCCATTTTACCTGAGGGGGGATCTGACAAAGAAAAAAAACTTAAGAAATACAAAACTGAAGTTGTTG
GTTCAAAGAAATTTATCGTTGGAAAATTTCTGGATTACAAAATGGTGGACTTCAAAACTGTAATCAATCAGGTTCAGGAAATTCAGGTAATTCTATATGATATATATGCT
GAGAATATGACTTTGAGTGAGTCTTTTCAGGAACTTGTGGTCCAACTTGGGATTGAAGAAAATAATAGAAAGGCAGAAAAGTGTACTATGGATAATACAATGGATTCCAA
GGCCAACATTGTGGAAAATAGATCACAAAGTAACAAGAAAAGGAAGTTTTTTGGTGAAGAAGTTGATGAAGTATCAGATGGTGTTGCAAATATTGACCTTTGTGCAGTCA
TTTTAGAATGCAACATGGTGGACAATTCGAAGGAGTGGTGGGTAGACACTGGGGCTACTCGTCATATTTGTGCCAACAAGGATATGTTCACATCATATGTGCCAGTTGAA
GGACAAGGCAAAGTGATTCTTAAGATGACCTCTGGCAAGGAACTCACTCTCAACAATGCGCTTCATGTTCCTAACATTCGCAAGAACTTAGTTTCTGGTTCATTGCTTAG
TAAGAATGGCTTTAAGTTGGTTTTTGTATCTAATAAGTTTGTACTTTCCAAGAATGAGATGTACATTGGAAAGGGTTATTTGAGTGATGGTCTATTTAAATTAAATGTAC
TCACAGTTGTACACAAAAGTATTATTAATAAGGTATCTACTCTTGCTTATATTGTTGAGTCATTTGTTTGGCATGGCAGACTAGGACATGTTAATTTTAATTCTTTGCAA
AGACTAATTAATATGAACTTGATTCCAAAATTCACTTTTGACACAAATCATGGATGTGAGATGTGTAGAATTACCAAACCTTTAGAGTTAATTCATAGTGATATTTGTGA
CTTGAAATTTGTGCAAACTAGATGTGGAAAAAAGTATTTTATTACTTTTATCGATGATAGCACAAGATATTGTTATGTTTATCTGCTAAAAAGCAAAGATGAGGCAATTG
AAGTGTTTAAGCTTTATAAAAAAGAGGTTGAAAATCAACTTAGCACAAAAATTAAGGCAATAAGAAGTGATCGAGGTGGTGAATATGGTCCTCCTTTTGAACAATTTTGT
TCAGAACATGGCATTATTCACCAAACTACAGCTCCTTACTCATCTCAATCGAATGAAATTGTTGAACGAAAAAACCGACCACTTAAGGAAATGATGAACGCAACGCTTAT
AAGTTCAGGTTTACCCCAAAATTTGTGGGAAGAAGCTTTGTTAACAGCAAATTATTTATTAAACAGAATTCCTCATAAGAAGTCACAAAATATTCCTTATGAAAAGTGGA
AAGGAAGAAAACCTTCATATAAATTCTTAAAAGTATGGGGGTGCCTAACAAAGGTTGTCATGCCTAAACCTAAAATGGTTAACATTGGAACAAAAACTGTTGATTGGTTA
TGCTAG
Protein sequenceShow/hide protein sequence
MTLTNFNSPITGVAHGKKPEKFGGVDFKRWQQKMLFYLTTLNLAKFLTEDAPILPEGGSDKEKKLKKYKTEVVGSKKFIVGKFLDYKMVDFKTVINQVQEIQVILYDIYA
ENMTLSESFQELVVQLGIEENNRKAEKCTMDNTMDSKANIVENRSQSNKKRKFFGEEVDEVSDGVANIDLCAVILECNMVDNSKEWWVDTGATRHICANKDMFTSYVPVE
GQGKVILKMTSGKELTLNNALHVPNIRKNLVSGSLLSKNGFKLVFVSNKFVLSKNEMYIGKGYLSDGLFKLNVLTVVHKSIINKVSTLAYIVESFVWHGRLGHVNFNSLQ
RLINMNLIPKFTFDTNHGCEMCRITKPLELIHSDICDLKFVQTRCGKKYFITFIDDSTRYCYVYLLKSKDEAIEVFKLYKKEVENQLSTKIKAIRSDRGGEYGPPFEQFC
SEHGIIHQTTAPYSSQSNEIVERKNRPLKEMMNATLISSGLPQNLWEEALLTANYLLNRIPHKKSQNIPYEKWKGRKPSYKFLKVWGCLTKVVMPKPKMVNIGTKTVDWL
C