; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G21440 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G21440
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L18a-like protein
Genome locationChr1:17047688..17051224
RNA-Seq ExpressionCSPI01G21440
SyntenyCSPI01G21440
Gene Ontology termsGO:0005840 - ribosome (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044804 - AT1G29970-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147407.1 60S ribosomal protein L18a-like protein [Cucumis sativus]8.7e-89100Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

XP_008444018.1 PREDICTED: 60S ribosomal protein L18a-like protein [Cucumis melo]1.6e-8798.74Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVA PVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

XP_022140257.1 60S ribosomal protein L18a-like protein [Momordica charantia]6.0e-7484.91Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG  P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC IASVLA++AITFG+T G E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

XP_022927552.1 60S ribosomal protein L18a-like protein [Cucurbita moschata]4.3e-7283.65Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKS+ VFGDP SQYHYGTFQGVANYY+S P+PQPQP PQSVVGFP  VA P      PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAF+VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

XP_038895475.1 60S ribosomal protein L18a-like protein [Benincasa hispida]5.5e-7588.05Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKS+ VFGDP SQYHYGTFQGVANYY+S     PQ QPQS VGFPQPV    VSGH PCYHGHLGYQAVPVQGYAI+E RPF+EARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

TrEMBL top hitse value%identityAlignment
A0A0A0M051 Uncharacterized protein4.2e-89100Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

A0A1S3B9D9 60S ribosomal protein L18a-like protein7.9e-8898.74Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKS+VVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVA PVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

A0A6J1CGC1 60S ribosomal protein L18a-like protein2.9e-7484.91Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGK++ V GDP SQYHYGTFQGVANYY S  QPQPQPQP SVVGFPQPVA P VSG  P YHGHLGYQAVPVQGYAI+EGRP+QEARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLF+IGFFLGGIPWYVGAFIVLFVRVDYREKPGYVAC IASVLA++AITFG+T G E W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

A0A6J1EHH7 60S ribosomal protein L18a-like protein2.1e-7283.65Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MSGDGKS+ VFGDP SQYHYGTFQGVANYY+S P+PQPQP PQSVVGFP  VA P      PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAF+VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

A0A6J1KIR0 60S ribosomal protein L18a-like protein1.0e-7183.65Show/hide
Query:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW
        MS DGKS+ VFGDP SQYHYGTFQGVANYY+S PQPQPQP PQSVVGFP  VA P      PCYHGHL YQAVPVQGYAI+EGRPF EARLPCCGIGMGW
Subjt:  MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGW

Query:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        FLFMIGFFLGGIPWYVGAF+VLFVRVDYREKPGY+ACAIASVLAV+AITFG++ GVE W
Subjt:  FLFMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

SwissProt top hitse value%identityAlignment
Q8L9S1 60S ribosomal protein L18a-like protein2.7e-3251.05Show/hide
Query:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYV
        QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+
Subjt:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYV

Query:  GAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        GAFIVL   VD+REK GYVAC+IASV+ +IA+  G+T  +  W
Subjt:  GAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

Arabidopsis top hitse value%identityAlignment
AT1G17080.1 Ribosomal protein L18ae family2.7e-4053.8Show/hide
Query:  DGKSNVVFGDPHSQYH-YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFL
        + KS     +  +Q+H YGTFQGV+NY   PP     P    V GFPQP A P V      Y+ H GYQ VPV G  + EGRP ++ RLPCCGIG+GWFL
Subjt:  DGKSNVVFGDPHSQYH-YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFL

Query:  FMIGFFLGGIPWYVGAFIVLF-VRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        F++GFFLG IPWYVG FI++F  R+DYREKPGY+AC IA++LA IA+  G++ G + W
Subjt:  FMIGFFLGGIPWYVGAFIVLF-VRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

AT1G29970.1 60S ribosomal protein L18A-11.9e-3351.05Show/hide
Query:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYV
        QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+
Subjt:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYV

Query:  GAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        GAFIVL   VD+REK GYVAC+IASV+ +IA+  G+T  +  W
Subjt:  GAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

AT1G29970.2 60S ribosomal protein L18A-11.4e-2853.23Show/hide
Query:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYV
        QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V  Y ++E RP  E  LPCCG+GMGWFLF++GF  GGIPWY+
Subjt:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYV

Query:  GAFIVLFVRVDYREKPGYVACAIA
        GAFIVL   VD+REK GYVAC+IA
Subjt:  GAFIVLFVRVDYREKPGYVACAIA

AT1G29970.3 60S ribosomal protein L18A-12.6e-2739.46Show/hide
Query:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFL--------------
        QY+YGTFQGVAN+ T  P PQ       +  FP    Q  + GH    +   G+  V V  Y ++E RP  E  LPCCG+GMGWFL              
Subjt:  QYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFL--------------

Query:  ----------------------------FMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
                                    F++GF  GGIPWY+GAFIVL   VD+REK GYVAC+IASV+ +IA+  G+T  +  W
Subjt:  ----------------------------FMIGFFLGGIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW

AT1G53560.1 Ribosomal protein L18ae family8.5e-3450.71Show/hide
Query:  YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF
        YGTFQGV  Y   PP     P    V+G PQP   P    H    H ++  +   V GY + +GRP ++ RLPCCG+G+GWFLF+IGF LG IPWYVG F
Subjt:  YGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLGGIPWYVGAF

Query:  IVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW
        I++  R+D REKPGYVAC IA+V+A I I FG+  G   W
Subjt:  IVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATACTTCTCCTCCACAACCGCA
GCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATCTGGGTTACCAAGCCGTTC
CTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATGATTGGCTTCTTTCTTGGT
GGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTCAGTTCTTGCTGTCATAGC
TATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGA
mRNA sequenceShow/hide mRNA sequence
CAATTACGCCCGAGCTGAGTACAAACTGCCAGCTGTACGACTTCAATTCACCAAAATCAGGAAACACCACCGCCTTATTAGAAACCGGACACACCCATTCTCCATTCCGC
CAAGCTCCGTTCACCGTCGCTCCCAACTTTTCCGGTGAAATCGCAGAAGAAGATAACAGTGACGACGAGACCTTCGCCGTCGTCTTGATATTCAAGAAACCTTCTCTGAT
TCTTCTTCTGCAAACAATATGAGTGGCGACGGGAAAAGCAACGTGGTATTCGGCGATCCACATAGTCAATACCATTACGGTACGTTTCAGGGTGTTGCGAACTATTATAC
TTCTCCTCCACAACCGCAGCCGCAGCCCCAGCCCCAATCTGTCGTCGGTTTCCCTCAGCCGGTTGCGCAACCCGTTGTTTCTGGTCATCAGCCATGCTACCATGGACATC
TGGGTTACCAAGCCGTTCCTGTTCAAGGTTATGCTATTCTTGAGGGAAGACCTTTTCAAGAAGCCCGTCTTCCTTGCTGTGGCATTGGCATGGGCTGGTTCTTGTTTATG
ATTGGCTTCTTTCTTGGTGGCATTCCCTGGTATGTTGGAGCTTTTATTGTACTCTTTGTACGGGTCGATTACCGAGAAAAGCCTGGATATGTTGCATGTGCAATTGCTTC
AGTTCTTGCTGTCATAGCTATAACATTTGGTATCACCAACGGAGTTGAGCCCTGGTGAAGGAAACATATGAAGAACGGTCTGGTGTGATCGATACCGATGTCACCCTCCC
CCTGTATTGACAAACAACTGGTGTGATACTGTAATTAGCTTTTGAATTGTTATTCTTTCCATCTATATTTATCAACTTATTGGTTTCCTTTACCATATAGATATCTGAAT
CTTCCTGACTTGCCAAAATTTGAAATGAAATGTTAATAGATTGAAAGACAAAATTATTAGCTTTATTGGAAGGGTTTTTCTTTTTTATTATAATTATAAATTCTGG
Protein sequenceShow/hide protein sequence
MSGDGKSNVVFGDPHSQYHYGTFQGVANYYTSPPQPQPQPQPQSVVGFPQPVAQPVVSGHQPCYHGHLGYQAVPVQGYAILEGRPFQEARLPCCGIGMGWFLFMIGFFLG
GIPWYVGAFIVLFVRVDYREKPGYVACAIASVLAVIAITFGITNGVEPW