CuGenDBv2

Gene ID	CSPI01G21560
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Phytochrome
Genome location	Chr1:17152744..17154016
RNA-Seq Expression	CSPI01G21560
Synteny	CSPI01G21560
Gene Ontology terms	GO:0000160 - phosphorelay signal transduction system (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009584 - detection of visible light (biological process) GO:0009585 - red, far-red light phototransduction (biological process) GO:0017006 - protein-tetrapyrrole linkage (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0000155 - phosphorelay sensor kinase activity (molecular function) GO:0009881 - photoreceptor activity (molecular function) GO:0042803 - protein homodimerization activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0057092.1 phytochrome E [Cucumis melo var. makuwa]

3.4e-33

93.67

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRR RG  EA T QRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

XP_004147430.1 phytochrome E isoform X1 [Cucumis sativus]

1.9e-36

100

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

XP_008443902.1 PREDICTED: LOW QUALITY PROTEIN: phytochrome E [Cucumis melo]

3.4e-33

93.67

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRR RG  EA T QRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

XP_011657461.1 phytochrome E isoform X3 [Cucumis sativus]

1.9e-36

100

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

XP_022927449.1 phytochrome E-like [Cucurbita moschata]

1.7e-32

93.67

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLP ELIQDMVGGGQQW+SEQGLALNLSRRLLNKLNGNV YVREQTKCYFLIDLELKLRR RGS EATTSQRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

TrEMBL top hits

e value

%identity

Alignment

A0A1S3B972 Phytochrome

1.6e-33

93.67

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRR RG  EA T QRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

A0A5A7UML0 Phytochrome E

1.6e-33

93.67

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRR RG  EA T QRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

A0A6J1EI12 Phytochrome

8.1e-33

93.67

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLP ELIQDMVGGGQQW+SEQGLALNLSRRLLNKLNGNV YVREQTKCYFLIDLELKLRR RGS EATTSQRT
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

A0A6J1GUD1 Phytochrome

5.3e-32

89.87

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLP ELIQDMVGGGQQWTS+QGLALNLSRRLLNKL+GN+RYVREQTKCYF+IDLELKLRR RGS EATTSQ T
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

A0A6J1JZY6 Phytochrome

1.2e-31

89.87

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT
        MSHPGQGLP ELIQDMVGGGQQWTS+QGLALNLSRRLLNKL+GN+RYVREQTKCYFLIDLELKLR  RGS EATTSQ T
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

SwissProt top hits

e value

%identity

Alignment

P14713 Phytochrome B

1.3e-11

46.05

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTS
        M+ PG+GLP EL++DM     +WTS +GL L++ R++L  +NG V+Y+RE  + YFLI LEL + R R  + A+ S
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTS

P29130 Phytochrome B

9.9e-12

47.76

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Query:  PGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGS
        PG+GLP EL+QDM     +W +++GL L++ R++L  +NG+++Y+RE  +CYFLI L+L + R RGS
Subjt:  PGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGS

P42498 Phytochrome E

1.5e-12

49.21

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELK
        M HPG+GLP E++ DM      W +  GL L LSR+LL ++NG V YVRE  +C+F +DL++K
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELK

P42499 Phytochrome B

1.7e-11

49.21

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Query:  PGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRR
        PG+GLP ELIQDM     +W +++GL L++SR++L  +NG V+Y+RE  +CYF + LEL + R
Subjt:  PGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRR

P55004 Phytochrome E

1.4e-18

58.82

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLR
        M+HPGQGLP  LI+DMV GG +WT+++G+ L+LS++L+  +NG+V YVREQ KCYFLIDL+ K ++ R
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLR

Arabidopsis top hits

e value

%identity

Alignment

AT1G09570.1 phytochrome A

3.4e-07

40.32

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL
        ++H G G+P  L+  M  G ++  SE+GL+L +SR+L+  +NG+V+Y+R+  K  F+I  EL
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL

AT1G09570.2 phytochrome A

3.4e-07

40.32

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL
        ++H G G+P  L+  M  G ++  SE+GL+L +SR+L+  +NG+V+Y+R+  K  F+I  EL
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL

AT2G18790.1 phytochrome B

9.2e-13

46.05

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTS
        M+ PG+GLP EL++DM     +WTS +GL L++ R++L  +NG V+Y+RE  + YFLI LEL + R R  + A+ S
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTS

AT4G16250.1 phytochrome D

1.2e-09

45.16

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL
        M+  G+G+P E +QDM     +WTS +GL L++ R++L  +NG V+Y+RE  + YFLI +EL
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLEL

AT4G18130.1 phytochrome E

1.1e-13

49.21

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Query:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELK
        M HPG+GLP E++ DM      W +  GL L LSR+LL ++NG V YVRE  +C+F +DL++K
Subjt:  MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELK

Sequences

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CDS sequence

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ATGTCACATCCAGGTCAAGGTTTGCCTCATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACCTGTCACGCAGACT
TCTTAATAAATTGAACGGTAATGTCCGCTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTTGAGAGGGTCAACAGAAGCTA
CTACGAGCCAAAGGACTTGA

mRNA sequence

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GTGAAGGTTGCTTGATGAACTTAAATTCTTTTTCTGTAACTGGTTGGTCTAATAAATTAAGGTGTAATGTAAGTCTAATGTGTGACAGCCACATGAACCATCATGGATTA
GCCTAGTGGTAAAAACTAAAAAGGATGACATAGTTTCAATAATTAAGAGACTTGGTTTAATCCATGGTGGCTATGTACTTTGTAATTAATTTTCTACGAGTTTTCTTGAC
ACCCAAATGTTGTAGGGTCAGACGGATTGTCTTGTGAGATTAGTTGAGATGTGCGTAACCTACCTCAGACACTTGCAGATAGAGGATGGATGTGAACCATGTGAATACGA
CCAACGTGCCGTCCTTTTTTACACGTGACTATTATTTTTACCGTATAGACTAAATTGTTACGAAAGTTAATAGCATCTATCAAATTGTATAATATTAAAGATTAGGGACT
AAATCATTATAAATTTTGAACTAACTAGCACCATTCTGAGTGATGCAGAGATTTTTCCTGGCCATGTCCTGGTGGAATTGTTAGTGGTGATCACTTCTTTAATCCATATT
TCTTGGTGATCTTGCTACTAGTCTTGAAAGGCACAAGAACTGGGACTTGAATTCATTTTATTTTATTTTATTTGTATGTAGAATGTCACATCCAGGTCAAGGTTTGCCTC
ATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCCTGGCCCTAAACCTGTCACGCAGACTTCTTAATAAATTGAACGGTAATGTCCGC
TATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTTGAGAGGGTCAACAGAAGCTACTACGAGCCAAAGGACTTGAGTTTCTAG
TTTCGAGCTGATGAGCACTTGTACAAATAGAATTGAGAACCCTTCTCATTTTGAGCCTGGACGACGTGAAAATCCAGTAGTGTCCCCAGCACAATTGTTTTACCTGATAA
ATGAAAGCATTCGACGGGTCCATTTTTCAGTTGTGACAACGTTGGATGGTCAGATTTGGTGTGAAAATTGTATGCAATATGTTTGTAAATGATAAAGTCGGATTTAGAAG
TTTGTGAAGTTCTTGTATTTAGTAGTTGCCGCTGCTGGTGCATGTTTCAGCAATGCGGCAGTGTATATGAATGAAAACTGAAACATGCAGTTTTGTTTGTTGCGTTATGT
ATGTGAAAGCCATACATTGTAATATATTTGAGAATTGTGCTTATTCTGGCACTTTTTATGACT

Protein sequence

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MSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRLRGSTEATTSQRT

CSPI01G21560 (gene) of Cucumber (PI 183967) v1 genome