; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G22430 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G22430
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTHO complex subunit 4A
Genome locationChr1:17998497..18002211
RNA-Seq ExpressionCSPI01G22430
SyntenyCSPI01G22430
Gene Ontology termsGO:0006406 - mRNA export from nucleus (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR025715 - Chromatin target of PRMT1 protein, C-terminal
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583468.1 THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]3.0e-11289.84Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETAWSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPA+PA +N +FGNPNGF RGG  +GRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG GRG GS   S RG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

XP_004149042.2 THO complex subunit 4A isoform X1 [Cucumis sativus]1.1e-12798.4Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGR----GSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRGRGR    GSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
Subjt:  GRGPGRGRGR----GSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

XP_008457549.1 PREDICTED: THO complex subunit 4A [Cucumis melo]1.3e-12397.15Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEI+FSR ADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGN NGFPRGGRAMGRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG GRG GSGSGSGRG GEKLSAEDLDADLDKYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

XP_022970368.1 THO complex subunit 4A-like [Cucurbita maxima]3.0e-11290.24Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETAWSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FGNPNGF RGG  +GRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG GRG GS   S RG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

XP_038895300.1 THO complex subunit 4A-like [Benincasa hispida]1.2e-11893.09Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYS +KAPETAWSHDMFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPA SNA FGNPNGFPRGGRA+GRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG   G G GSGSGRG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

TrEMBL top hitse value%identityAlignment
A0A0A0LUQ3 RRM domain-containing protein5.4e-12898.4Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGR----GSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRGRGR    GSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
Subjt:  GRGPGRGRGR----GSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

A0A1S3C5R6 THO complex subunit 4A6.2e-12497.15Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEI+FSR ADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGN NGFPRGGRAMGRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG GRG GSGSGSGRG GEKLSAEDLDADLDKYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1G9Y5 THO complex subunit 4A-like isoform X24.8e-10885.37Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        M +PLD SLDDIIKNNKKSGSSNFR RGGASSGP PSRRF NRGLNRA PYS +KAPET WSHD+FVDHG AYPSHP RAS IETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAE+VFSRQADALAAIKRYNNVQLDGKPMKLEIVG NIVTP +PA SN +FGN +GF RGGRA+GRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG     G G G+GRG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1HLI4 THO complex subunit 4B-like2.4e-11289.84Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETAWSHDMFVDHG+AYPS P RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FGNPNGF RGG  +GRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG GRG GS   S RG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

A0A6J1I3N4 THO complex subunit 4A-like1.4e-11290.24Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN
        MAEPLDMSLDDIIKNNKKSGSSNFR RGGASSGPGPSRRFRNRGLNRA PYST++APETAWSHDMFVDHGAAYPS P RASAIETGTKLYVSNLDYGVSN
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSN

Query:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR
        EDIKELFSEVGD+KRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGK MKLEIVGTNIVTPAVPA +N +FGNPNGF RGG  +GRNRGGGR
Subjt:  EDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGR

Query:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        GRGPGRG GRG GS   S RG GEKLSAEDLDADL+KYHEEAMQIN
Subjt:  GRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

SwissProt top hitse value%identityAlignment
B5FXN8 THO complex subunit 41.1e-3743.89Show/hide
Query:  MAEPLDMSLDDIIKNNKKS-----GSSNFRARGGASSGPGPSR-----------RFRNR-------GLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHP
        MA+ +DMSLDDIIK N+       G    R RGG + G GP R             RNR       G NR  PYS  K     W HD+F D G       
Subjt:  MAEPLDMSLDDIIKNNKKS-----GSSNFRARGGASSGPGPSR-----------RFRNR-------GLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHP

Query:  PRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNA
           + +ETG KL VSNLD+GVS+ DI+ELF+E G +K+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+PM +++V + I T   PA S  
Subjt:  PRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNA

Query:  SFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYH
           N  G  R    +G   GGG  RG    RG   G G G+GR   ++LSAE+LDA LD Y+
Subjt:  SFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYH

Q58EA2 THO complex subunit 4-A2.8e-3643.4Show/hide
Query:  MAEPLDMSLDDIIKNNKKS-----------GSSNFRARGGAS--------------SGPGPSRRFRNR-GLNRATPYSTSKAPETAWSHDMFVDHGAAYP
        M + +DMSLDDIIK N+             G+    ARGGA                GP  SR   +R G NR TPYS  K     W HD+F D G    
Subjt:  MAEPLDMSLDDIIKNNKKS-----------GSSNFRARGGAS--------------SGPGPSRRFRNR-GLNRATPYSTSKAPETAWSHDMFVDHGAAYP

Query:  SHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAP
              + +ETG KL VSNLD+GVS+ DI+ELF+E G +K+ +++YD+SGRS GTA++ F R+ADAL A+K+YN V LDG+PM +++V + I     P  
Subjt:  SHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAP

Query:  SNASFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYH
        S +  G     PRGG  +G   G  RGRG  RGRGR      G+GR   ++LSAE+LDA LD Y+
Subjt:  SNASFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYH

Q6NQ72 THO complex subunit 4D5.5e-3741.72Show/hide
Query:  MAEPLDMSLDDIIKNNK--KSGSSNF-----RARGGASSGPGPSRRFRNRGLNRATPYSTSK----APETAWSHDMFVDHGAAYPSHPPRASAIETGTKL
        M+  L+M+LD+I+K  K  +SG         R RGG   G GP+RR       R + ++ +K         W   +F D   A       AS +E GT+L
Subjt:  MAEPLDMSLDDIIKNNK--KSGSSNF-----RARGGASSGPGPSRRFRNRGLNRATPYSTSK----APETAWSHDMFVDHGAAYPSHPPRASAIETGTKL

Query:  YVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA-VPAPSNASFGNPNG----
        +V+NLD GV+NEDI+ELFSE+G+V+RY+I+YDK+GR  GTAE+V+ R++DA  A+K+YNNV LDG+PM+LEI+G N  + A +    N +    NG    
Subjt:  YVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA-VPAPSNASFGNPNG----

Query:  ---FPRGGRAMGRNRGGGRGRGP--------------------GRG----RGRGSGS-GSGSGRGHGEK---LSAEDLDADLDKYHEEAM
             +GG   GR RGG  GRGP                    GRG    RGRG+G  G G GRG+G+K    SA DLD DL+ YH +AM
Subjt:  ---FPRGGRAMGRNRGGGRGRGP--------------------GRG----RGRGSGS-GSGSGRGHGEK---LSAEDLDADLDKYHEEAM

Q8L719 THO complex subunit 4B1.2e-6054.95Show/hide
Query:  MAEPLDMSLDDIIKNNKK----------SGSSNFRARGGASSGPGPSRRFRNRGLNRATPYS----TSKAPETAWSHDMFVDH---GAAYPSHPPR----
        M+  LDMSLDDIIK+N+K           G +N   RGG+ S  GPSRRF NR   R  PYS      +A +  W +D+F       AA+  H       
Subjt:  MAEPLDMSLDDIIKNNKK----------SGSSNFRARGGASSGPGPSRRFRNRGLNRATPYS----TSKAPETAWSHDMFVDH---GAAYPSHPPR----

Query:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA--------V
         S+IETGTKLY+SNLDYGVSNEDIKELFSEVGD+KRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTN+  PA        +
Subjt:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA--------V

Query:  PAPSNASFGNPN----------------GFPRGGRAMGRNRGGGRGRGPGRG----RGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQ
        P P+N   GN N                G  RGG  MGR RGGG G G  RG    RGRG G GSG GRG  E +SAEDLDA+LDKYH+EAM+
Subjt:  PAPSNASFGNPN----------------GFPRGGRAMGRNRGGGRGRGPGRG----RGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQ

Q8L773 THO complex subunit 4A8.2e-6560.56Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS      ARG G+ SGPGP+RR   NR   R+ PY ++KAPE+ W HDMF D    + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP-RGGRAM-GRN
        V NEDIKELF+EVG++KRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN+ T A P+   A+ GN NG P RGG+   G+ 
Subjt:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP-RGGRAM-GRN

Query:  RGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        RGGGRG   G GRG G G G   G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  RGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

Arabidopsis top hitse value%identityAlignment
AT5G02530.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.7e-6254.95Show/hide
Query:  MAEPLDMSLDDIIKNNKK----------SGSSNFRARGGASSGPGPSRRFRNRGLNRATPYS----TSKAPETAWSHDMFVDH---GAAYPSHPPR----
        M+  LDMSLDDIIK+N+K           G +N   RGG+ S  GPSRRF NR   R  PYS      +A +  W +D+F       AA+  H       
Subjt:  MAEPLDMSLDDIIKNNKK----------SGSSNFRARGGASSGPGPSRRFRNRGLNRATPYS----TSKAPETAWSHDMFVDH---GAAYPSHPPR----

Query:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA--------V
         S+IETGTKLY+SNLDYGVSNEDIKELFSEVGD+KRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTN+  PA        +
Subjt:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA--------V

Query:  PAPSNASFGNPN----------------GFPRGGRAMGRNRGGGRGRGPGRG----RGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQ
        P P+N   GN N                G  RGG  MGR RGGG G G  RG    RGRG G GSG GRG  E +SAEDLDA+LDKYH+EAM+
Subjt:  PAPSNASFGNPN----------------GFPRGGRAMGRNRGGGRGRGPGRG----RGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQ

AT5G02530.2 RNA-binding (RRM/RBD/RNP motifs) family protein8.7e-6254.83Show/hide
Query:  MAEPLDMSLDDIIKNNKK----------SGSSNFRARGGASSGPGPSRRFRNRGLNRATPYS----TSKAPETAWSHDMFVDH---GAAYPSHPPR----
        M+  LDMSLDDIIK+N+K           G +N   RGG+ S  GPSRRF NR   R  PYS      +A +  W +D+F       AA+  H       
Subjt:  MAEPLDMSLDDIIKNNKK----------SGSSNFRARGGASSGPGPSRRFRNRGLNRATPYS----TSKAPETAWSHDMFVDH---GAAYPSHPPR----

Query:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA--------V
         S+IETGTKLY+SNLDYGVSNEDIKELFSEVGD+KRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+EIVGTN+  PA        +
Subjt:  ASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPA--------V

Query:  PAPSNASFGNPN-------------GFPRGGRAMGRNRGGGRGRGPGRG----RGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQ
        P P+N   GN N              F   G  MGR RGGG G G  RG    RGRG G GSG GRG  E +SAEDLDA+LDKYH+EAM+
Subjt:  PAPSNASFGNPN-------------GFPRGGRAMGRNRGGGRGRGPGRG----RGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQ

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein5.8e-6660.56Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS      ARG G+ SGPGP+RR   NR   R+ PY ++KAPE+ W HDMF D    + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP-RGGRAM-GRN
        V NEDIKELF+EVG++KRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN+ T A P+   A+ GN NG P RGG+   G+ 
Subjt:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP-RGGRAM-GRN

Query:  RGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        RGGGRG   G GRG G G G   G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  RGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

AT5G59950.3 RNA-binding (RRM/RBD/RNP motifs) family protein9.3e-6460.16Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS      ARG G+ SGPGP+RR   NR   R+ PY +  APE+ W HDMF D    + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP-RGGRAM-GRN
        V NEDIKELF+EVG++KRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN+ T A P+   A+ GN NG P RGG+   G+ 
Subjt:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP-RGGRAM-GRN

Query:  RGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
        RGGGRG   G GRG G G G   G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  RGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN

AT5G59950.5 RNA-binding (RRM/RBD/RNP motifs) family protein7.6e-6660.32Show/hide
Query:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG
        M+  LDMSLDD+I  N+KS      ARG G+ SGPGP+RR   NR   R+ PY ++KAPE+ W HDMF D    + S   R+SA IETGTKLY+SNLDYG
Subjt:  MAEPLDMSLDDIIKNNKKSGSSNFRARG-GASSGPGPSRRFR-NRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASA-IETGTKLYVSNLDYG

Query:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP--RGGRAM-GR
        V NEDIKELF+EVG++KRY++++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVGTN+ T A P+   A+ GN NG P  RGG+   G+
Subjt:  VSNEDIKELFSEVGDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFP--RGGRAM-GR

Query:  NRGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN
         RGGGRG   G GRG G G G   G+G  EK+SAEDLDADLDKYH   M+ N
Subjt:  NRGGGRGRGPGRGRGRGSGSGSGSGRGHGEKLSAEDLDADLDKYHEEAMQIN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAGCCTCTCGACATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGCTCCTCAAACTTCAGAGCTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTC
TCGCCGCTTTCGCAATCGTGGTCTTAATAGAGCAACGCCTTATTCTACTTCCAAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCACGGTGCGGCTTATC
CTTCACATCCTCCACGGGCTTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAATGAAGATATCAAGGAGCTGTTTTCTGAAGTT
GGTGATGTCAAACGGTATTCTATCAATTATGATAAAAGTGGGAGATCGAAGGGAACAGCAGAGATTGTTTTTTCACGACAAGCAGATGCTCTTGCTGCTATAAAGAGATA
TAACAATGTTCAGCTGGATGGGAAGCCCATGAAGTTGGAGATTGTTGGCACTAACATCGTTACACCTGCTGTGCCTGCTCCTTCAAATGCTAGTTTTGGGAATCCTAATG
GATTTCCGAGAGGTGGACGTGCAATGGGTCGAAACCGAGGTGGTGGACGAGGGCGTGGTCCTGGAAGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGAGTGGCAGA
GGTCATGGTGAGAAGTTATCAGCCGAAGATCTAGATGCGGATTTGGACAAGTACCATGAAGAAGCGATGCAGATCAATTAA
mRNA sequenceShow/hide mRNA sequence
CTCATAATTTGATAGCACGAAATTCTTCGCAATTGGCTTCTTCCCTAATTTGCTCACAACATCACCACATCCTTCGATCGGAACCCTAGAAATTGTTATCTCCGATCCAC
GACCACCAATGGCAGAGCCTCTCGACATGAGCTTAGATGATATCATCAAGAACAACAAGAAATCCGGCTCCTCAAACTTCAGAGCTCGTGGCGGAGCTTCTTCTGGACCA
GGTCCTTCTCGCCGCTTTCGCAATCGTGGTCTTAATAGAGCAACGCCTTATTCTACTTCCAAGGCGCCCGAGACGGCTTGGTCACACGACATGTTTGTAGATCACGGTGC
GGCTTATCCTTCACATCCTCCACGGGCTTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAATGAAGATATCAAGGAGCTGTTTT
CTGAAGTTGGTGATGTCAAACGGTATTCTATCAATTATGATAAAAGTGGGAGATCGAAGGGAACAGCAGAGATTGTTTTTTCACGACAAGCAGATGCTCTTGCTGCTATA
AAGAGATATAACAATGTTCAGCTGGATGGGAAGCCCATGAAGTTGGAGATTGTTGGCACTAACATCGTTACACCTGCTGTGCCTGCTCCTTCAAATGCTAGTTTTGGGAA
TCCTAATGGATTTCCGAGAGGTGGACGTGCAATGGGTCGAAACCGAGGTGGTGGACGAGGGCGTGGTCCTGGAAGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGGA
GTGGCAGAGGTCATGGTGAGAAGTTATCAGCCGAAGATCTAGATGCGGATTTGGACAAGTACCATGAAGAAGCGATGCAGATCAATTAAATCATTTGGTGTCATTTTCTG
GGGCTTGATATCCCTAACTACGTTAGGTGCTTGATGATGAATGTGATGAGGACATGTTTTTCTATTTTCGAGTCATATCATGAAGCCCTGACCTTGAGAGAATTGCTAGA
CGTTGCTAGGATGTGGAGTTTGGGCTTGTTTTGTTGTTTTGTTCCAGTAAACTATTAAGAGAGGTGTTCATATATGCTTGATTTTGTAATCTCCCGTTTCCAACCTATTT
TAATCTTCTTCAAACCTATTTATTTTACACGAAAATTGCACTGGAACTGGCAAAGTTGATCACTCACACTCCTTGTCTACATGGGAGGATTTGTGTCCATGACATGGGAA
GTATTGGTCCTAACAAAATCAACCACATCTGGTGTTGAGGCTACAGTTCCGGTACACCGCTTCTAAATCATAACTCCTTATTAGAATGATAGATACAGATGTAGCTGATA
GTCTGTTCTGTGCATTTTAATTATTGGATTCTGACTGCAGAAATTTTACTTTATTGCATTGCAGCGATTGGTTTTAAAACTAGTGTTAAGATCTTCTACTTGTTGGCATG
GAGAGGGAGGGAGGGGTGTGGAGTTGATACCAATGTTCAGAAGTTGGCATCGACTTCTGAAGCCCCTGAACCATTTAGAATTGGTATGCAGAAATAAGTCATTGGTGTGT
GTGGCTTTTACATTCCTGTGGTTATAGGGTTGCAGTTTTGTTTCTTCTGCTGATTTTGTTTGAGAACATTCCAGAATTTTGCATTCAATAATTAGAATGCAAAAAGGCAT
ATACCATACAATAATTTTGGCATTCTGCAGTTTTTGGGTTTCTTTTCTGTTTTTCATTTTAGTTTTGATTTTAAGAT
Protein sequenceShow/hide protein sequence
MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETAWSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEV
GDVKRYSINYDKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFGNPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGSGSGSGSGR
GHGEKLSAEDLDADLDKYHEEAMQIN