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CSPI01G22570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G22570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionZinc finger, C3HC4 type family protein
Genome locationChr1:18147310..18148674
RNA-Seq ExpressionCSPI01G22570
SyntenyCSPI01G22570
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6583307.1 General transcription and DNA repair factor IIH subunit TFB1-1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3791.95Show/hide
Query:  YVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        YVTMIS+LAQERLLG ALGSVFAGVVVFEQRKS+Y SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN AVDQTFGPVIQALSSRGW
Subjt:  YVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

KGN66041.2 hypothetical protein Csa_019677 [Cucumis sativus]1.0e-6998.56Show/hide
Query:  MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP-
        MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP 
Subjt:  MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP-

Query:  -MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
         MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
Subjt:  -MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

XP_004152895.1 uncharacterized protein LOC101206005 isoform X2 [Cucumis sativus]3.2e-39100Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

XP_008457526.1 PREDICTED: uncharacterized protein LOC103497197 isoform X2 [Cucumis melo]2.1e-3897.62Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MISVLAQERLLGFALGS FAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGP+IQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

XP_011657967.1 uncharacterized protein LOC101206005 isoform X1 [Cucumis sativus]1.0e-3797.67Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP  MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

TrEMBL top hitse value%identityAlignment
A0A0A0LXB2 Uncharacterized protein7.6e-7199.27Show/hide
Query:  MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPM
        MAAKVGCSPATTE SLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPM
Subjt:  MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPM

Query:  RKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        RKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
Subjt:  RKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

A0A1S3C5P6 uncharacterized protein LOC103497197 isoform X21.0e-3897.62Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MISVLAQERLLGFALGS FAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGP+IQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

A0A1S3C5V0 uncharacterized protein LOC103497197 isoform X13.2e-3795.35Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MISVLAQERLLGFALGS FAGVVVFEQRKSLYQSISENYPPATQSP  MRKPVLAKKYGPEFSHLWNRAVDQTFGP+IQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSP--MRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

A0A5D3BR76 Uncharacterized protein1.0e-3897.62Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MISVLAQERLLGFALGS FAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGP+IQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

A0A6J1HZ79 uncharacterized protein LOC1114694462.7e-3692.86Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MIS+LAQERLLG ALGSVFAGVVVFEQRKSLY SIS+NYPP TQSPMRKPVLAKKYGPEFSHLWN AVDQTFGPVIQALSSRGW
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G28430.1 unknown protein6.7e-1952.94Show/hide
Query:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISE-NYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW
        MIS+LAQERLLG+ LGS   G +VFEQRK ++ S+S+       Q+ +   +  KKY  EF+ LWN+AVDQTF P I+ LSSR W
Subjt:  MISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISE-NYPPATQSPMRKPVLAKKYGPEFSHLWNRAVDQTFGPVIQALSSRGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAAAGGTTGGGTGCAGTCCCGCTACAACCGAAGGTTCTCTCTTTACTACGGCCCAATCGTGTCCGCCCAGCTCCCTTCACCATCTTTCCCCAGAAAAACCTTT
CTTTATTTCTTTCTCCGACGGAAATCAAGCCGTGAAGCTTTATGTCACCATGATTTCCGTTCTTGCTCAGGAACGACTGCTTGGTTTTGCATTGGGGAGCGTGTTCGCCG
GGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCAATCCATTTCCGAAAACTATCCACCAGCTACCCAATCTCCAATGAGAAAACCTGTGCTAGCAAAGAAGTATGGC
CCAGAGTTTTCACACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCAAAGGTTGGGTGCAGTCCCGCTACAACCGAAGGTTCTCTCTTTACTACGGCCCAATCGTGTCCGCCCAGCTCCCTTCACCATCTTTCCCCAGAAAAACCTTT
CTTTATTTCTTTCTCCGACGGAAATCAAGCCGTGAAGCTTTATGTCACCATGATTTCCGTTCTTGCTCAGGAACGACTGCTTGGTTTTGCATTGGGGAGCGTGTTCGCCG
GGGTTGTTGTTTTTGAGCAACGGAAAAGCTTATACCAATCCATTTCCGAAAACTATCCACCAGCTACCCAATCTCCAATGAGAAAACCTGTGCTAGCAAAGAAGTATGGC
CCAGAGTTTTCACACCTATGGAATAGAGCTGTAGACCAGACGTTTGGACCCGTGATTCAGGCACTCAGTTCACGGGGATGGTGATATGTTGAGAATGGTTTCTTTCATCA
ATGTGTCTAATATCAATTTGTGAAACATGTAAGGAAACAGAATTTTAAATTACTAGTTTTAACATTCTGGATTATCAAAGAATTTATGTTATGTCCGTGAATCAAACTCC
AGAGCCATGAGCTTTAGGCCTTTAAAGCAATAAAACTGCTCTTTTTCTTAATTCCTTTTTCCCTATGTATTTCATTGAGAAGTCATGTGGTTAAATTGTTAACATACTAT
TGTGGGGAGTGAGTAGTCGAATATTTGGTTAGTAGTTCCTCATATGAGCACGAGTGAGAATGCAATCAGTTATACACTGCTAGTGCTCATGAATTGATGAACTGATGGCT
AAATACTATTGTATAATAGTCGTATAAAAGAGACAATTAACTAGCA
Protein sequenceShow/hide protein sequence
MAAKVGCSPATTEGSLFTTAQSCPPSSLHHLSPEKPFFISFSDGNQAVKLYVTMISVLAQERLLGFALGSVFAGVVVFEQRKSLYQSISENYPPATQSPMRKPVLAKKYG
PEFSHLWNRAVDQTFGPVIQALSSRGW