| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0043826.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 4.1e-139 | 66.98 | Show/hide |
Query: PVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKE-----DMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDAC
PVVRHSSIRLILSI VHFDMFIEQMDVTTTFLHGELE+VIYMAQPKGYEVKGKE DMVCRLHKS+YGL+QSPRQWYIRFDTFILKQG
Subjt: PVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKE-----DMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDAC
Query: VYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKL
T +++L LKK +S + +LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMS KAVSTPLASHF+L
Subjt: VYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKL
Query: SSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALSTTESEYISLG-
SSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMS SRDCDKS LL+GFTD DY ADLDKRS + L +EYISLG
Subjt: SSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALSTTESEYISLG-
Query: ---EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH---SSCTTVNDARLR
EAVWLKRIVGELLSQEFIPIIHCDSQ+AIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH ++C
Subjt: ---EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH---SSCTTVNDARLR
Query: HYSIVQRGSLGLSWHFVDGIVGLVVVD
++ R + F G+ G + VD
Subjt: HYSIVQRGSLGLSWHFVDGIVGLVVVD
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| KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa] | 2.8e-180 | 78.82 | Show/hide |
Query: RLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDACVYWKLSQRGTFIY
RLILSI VHFDMFIEQMDVTTTFLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYI FDTFILKQGFHRNSYDACVYWK SQ+GT+IY
Subjt: RLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDACVYWKLSQRGTFIY
Query: LLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKLSSSQCPVIEQERL
LLLYVDDMILVSKDYA IC+LKKQLS+EFEMKDLG+LKRILGMDVKRDREKGLLT+SQESYVIKLLEKYNMS KAVSTPLASHF+LSSSQCPV +QER+
Subjt: LLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKLSSSQCPVIEQERL
Query: EMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGFTDVDYDADLDKR-----------
EMSNIPYCNAVGSIMYLMICTRPDLG+AMSMI SRDCDKS LL+GFTD DY ADLDKR
Subjt: EMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGFTDVDYDADLDKR-----------
Query: ----SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDE
SWKV LQPVVALSTTESEYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVH E
Subjt: ----SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDE
Query: NLSDMLTKVLPAHSSCTTVNDARLR
NLSDMLTK L AH T + R
Subjt: NLSDMLTKVLPAHSSCTTVNDARLR
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| KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 7.7e-194 | 81.42 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GYTQKEGVDF+EIFSPVVRHSSIRLILSI VHFDMFIEQMDVTT FLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYIRFDTFILKQ
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
GFHRNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYAEIC+LKKQLS+EFEMKDLG+LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMS KAV
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
STPLASHF+LSSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMSMI SRDCDKS LL+GF
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
Query: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
TD DY ADLDKR SWKV LQPVVALSTTESEYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Subjt: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Query: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
KFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH
Subjt: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
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| TYK13826.1 putative polyprotein [Cucumis melo var. makuwa] | 1.2e-194 | 81.65 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GYTQKEGVDF+EIFSPVVRHSSIRLILSI VHFDMFIEQMDVTT FLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYIRFDTFILKQ
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
GFHRNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYAEIC+LKKQLS+EFEMKDLG+LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMSG KAV
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
STPLASHF+LSSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMSMI SRDCDKS LL+GF
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
Query: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
TD DY ADLDKR SWKV LQPVVALSTTESEYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Subjt: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Query: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
KFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH
Subjt: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
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| TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa] | 4.8e-188 | 85.64 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GYTQKEGVDF+EIFSPVVRHSSIRLILSI VHFDMFIEQMDVTT FLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYIRFDTFILKQ
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
GFHRNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYAEIC+LKKQLS+EFEMKDLG+LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMS KAV
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALST
STPLASHF+LSSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMS SRDCDKS LL+GFTD DY ADLDKRS + L
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALST
Query: TESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAHSS
+EYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH S
Subjt: TESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAHSS
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TP18 Putative gag-pol polyprotein | 2.0e-139 | 66.98 | Show/hide |
Query: PVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKE-----DMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDAC
PVVRHSSIRLILSI VHFDMFIEQMDVTTTFLHGELE+VIYMAQPKGYEVKGKE DMVCRLHKS+YGL+QSPRQWYIRFDTFILKQG
Subjt: PVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKE-----DMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDAC
Query: VYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKL
T +++L LKK +S + +LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMS KAVSTPLASHF+L
Subjt: VYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKL
Query: SSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALSTTESEYISLG-
SSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMS SRDCDKS LL+GFTD DY ADLDKRS + L +EYISLG
Subjt: SSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALSTTESEYISLG-
Query: ---EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH---SSCTTVNDARLR
EAVWLKRIVGELLSQEFIPIIHCDSQ+AIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH ++C
Subjt: ---EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH---SSCTTVNDARLR
Query: HYSIVQRGSLGLSWHFVDGIVGLVVVD
++ R + F G+ G + VD
Subjt: HYSIVQRGSLGLSWHFVDGIVGLVVVD
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| A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class | 1.4e-180 | 78.82 | Show/hide |
Query: RLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDACVYWKLSQRGTFIY
RLILSI VHFDMFIEQMDVTTTFLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYI FDTFILKQGFHRNSYDACVYWK SQ+GT+IY
Subjt: RLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDACVYWKLSQRGTFIY
Query: LLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKLSSSQCPVIEQERL
LLLYVDDMILVSKDYA IC+LKKQLS+EFEMKDLG+LKRILGMDVKRDREKGLLT+SQESYVIKLLEKYNMS KAVSTPLASHF+LSSSQCPV +QER+
Subjt: LLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKLSSSQCPVIEQERL
Query: EMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGFTDVDYDADLDKR-----------
EMSNIPYCNAVGSIMYLMICTRPDLG+AMSMI SRDCDKS LL+GFTD DY ADLDKR
Subjt: EMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGFTDVDYDADLDKR-----------
Query: ----SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDE
SWKV LQPVVALSTTESEYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVH E
Subjt: ----SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDE
Query: NLSDMLTKVLPAHSSCTTVNDARLR
NLSDMLTK L AH T + R
Subjt: NLSDMLTKVLPAHSSCTTVNDARLR
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| A0A5A7UB25 Putative gag-pol polyprotein | 3.7e-194 | 81.42 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GYTQKEGVDF+EIFSPVVRHSSIRLILSI VHFDMFIEQMDVTT FLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYIRFDTFILKQ
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
GFHRNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYAEIC+LKKQLS+EFEMKDLG+LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMS KAV
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
STPLASHF+LSSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMSMI SRDCDKS LL+GF
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
Query: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
TD DY ADLDKR SWKV LQPVVALSTTESEYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Subjt: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Query: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
KFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH
Subjt: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
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| A0A5D3CTV2 Putative polyprotein | 5.7e-195 | 81.65 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GYTQKEGVDF+EIFSPVVRHSSIRLILSI VHFDMFIEQMDVTT FLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYIRFDTFILKQ
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
GFHRNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYAEIC+LKKQLS+EFEMKDLG+LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMSG KAV
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
STPLASHF+LSSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMSMI SRDCDKS LL+GF
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMI--------------------------------SRDCDKSVLLKGF
Query: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
TD DY ADLDKR SWKV LQPVVALSTTESEYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Subjt: TDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Query: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
KFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH
Subjt: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAH
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| A0A5D3DNU1 Putative gag-pol polyprotein | 2.3e-188 | 85.64 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GYTQKEGVDF+EIFSPVVRHSSIRLILSI VHFDMFIEQMDVTT FLHGELE+VIYMAQPKGYEVKGKEDMVCRLHKS+YGL+QSPRQWYIRFDTFILKQ
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
GFHRNSYDACVYWK SQ+GT+IYLLLYVDDMILVSKDYAEIC+LKKQLS+EFEMKDLG+LKRILGMDVKRD+EKGLLT+SQESYVIKLLEKYNMS KAV
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALST
STPLASHF+LSSSQCPV +QER+EMSNIPYCNAVGSIMYLMICTRPDLG+AMS SRDCDKS LL+GFTD DY ADLDKRS + L
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMS------MISRDCDKSVLLKGFTDVDYDADLDKRSWKVTLQPVVALST
Query: TESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAHSS
+EYISLG EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVH ENLSDMLTK L AH S
Subjt: TESEYISLG----EAVWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPAHSS
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 5.0e-63 | 34.62 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
G+TQK +D+ E F+PV R SS R ILS+V+ +++ + QMDV T FL+G L++ IYM P+G + D VC+L+K+IYGL+Q+ R W+ F+ + +
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTF---IYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGC
F +S D C+Y + +G IY+LLYVDD+++ + D + K+ L +F M DL ++K +G+ ++ +K + +SQ +YV K+L K+NM C
Subjt: GFHRNSYDACVYWKLSQRGTF---IYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGC
Query: KAVSTPLAS--HFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR----------------------DCDKSVLLK-------
AVSTPL S +++L +S E N P + +G +MY+M+CTRPDL A++++SR D ++ K
Subjt: KAVSTPLAS--HFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR----------------------DCDKSVLLK-------
Query: ---GFTDVDY-DADLDKRS---------------WKVTLQPVVALSTTESEYISLGEAV----WLKRIVGELLSQEFIPI-IHCDSQSAIHLAKNPSHHE
G+ D D+ +++D++S W Q VA S+TE+EY++L EAV WLK ++ + + PI I+ D+Q I +A NPS H+
Subjt: ---GFTDVDY-DADLDKRS---------------WKVTLQPVVALSTTESEYISLGEAV----WLKRIVGELLSQEFIPI-IHCDSQSAIHLAKNPSHHE
Query: RSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPA
R+KHID+K+H+ R + + L + + L+D+ TK LPA
Subjt: RSKHIDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVLPA
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.3e-107 | 46.17 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
G+ QK+G+DF+EIFSPVV+ +SIR ILS+ D+ +EQ+DV T FLHG+LE+ IYM QP+G+EV GK+ MVC+L+KS+YGL+Q+PRQWY++FD+F+ Q
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
+ + D CVY+K FI LLLYVDDM++V KD I +LK LS F+MKDLG ++ILGM + R+R L +SQE Y+ ++LE++NM K V
Subjt: GFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAV
Query: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR-------------------------DC----DKSVLLKGFTDV
STPLA H KLS CP +E+ M+ +PY +AVGS+MY M+CTRPD+ HA+ ++SR DC +LKG+TD
Subjt: STPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR-------------------------DC----DKSVLLKGFTDV
Query: DYDADLDKR---------------SWKVTLQPVVALSTTESEYISLGEA----VWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFH
D D+D R SW+ LQ VALSTTE+EYI+ E +WLKR + EL + +++CDSQSAI L+KN +H R+KHIDV++H
Subjt: DYDADLDKR---------------SWKVTLQPVVALSTTESEYISLGEA----VWLKRIVGELLSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDVKFH
Query: YIRNVIAQKDVELVKVHYDENLSDMLTKVLP
+IR ++ + ++++K+ +EN +DMLTKV+P
Subjt: YIRNVIAQKDVELVKVHYDENLSDMLTKVLP
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| P25600 Putative transposon Ty5-1 protein YCL074W | 3.0e-23 | 28.9 | Show/hide |
Query: MDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYA
MDV T FL+ +++ IY+ QP G+ + D V L+ +YGL+Q+P W + + K GF R+ + +Y++ + G IY+ +YVDD+++ +
Subjt: MDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQGFHRNSYDACVYWKLSQRGTFIYLLLYVDDMILVSKDYA
Query: EICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMY
++K++L+ + MKDLGK+ + LG+++ + G +T+S + Y+ K + ++ K TPL + L + P ++ PY + VG +++
Subjt: EICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKAVSTPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMY
Query: LMICTRPDLGHAMSMISR
RPD+ + +S++SR
Subjt: LMICTRPDLGHAMSMISR
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.0e-51 | 32.1 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GY Q+ G+D+ E FSPV++ +SIR++L + V I Q+DV FL G L +YM+QP G+ K + + VC+L K++YGL+Q+PR WY+ ++L
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRG-TFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKA
GF + D ++ + QRG + +Y+L+YVDD+++ D + LS F +KD +L LG++ KR L +SQ Y++ LL + NM K
Subjt: GFHRNSYDACVYWKLSQRG-TFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKA
Query: VSTPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR----------DCDKSVL--------------------LKGFT
V+TP+A KLS + Y VGS+ YL TRPD+ +A++ +S+ K +L L ++
Subjt: VSTPLASHFKLSSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR----------DCDKSVL--------------------LKGFT
Query: DVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISL----GEAVWLKRIVGEL-LSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
D D+ D D SW Q V S+TE+EY S+ E W+ ++ EL + P+I+CD+ A +L NP H R KHI +
Subjt: DVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISL----GEAVWLKRIVGEL-LSQEFIPIIHCDSQSAIHLAKNPSHHERSKHIDV
Query: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVL
+H+IRN + + +V V + L+D LTK L
Subjt: KFHYIRNVIAQKDVELVKVHYDENLSDMLTKVL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 5.6e-54 | 33.26 | Show/hide |
Query: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
GY Q+ G+D+ E FSPV++ +SIR++L + V I Q+DV FL G L +YM+QP G+ K + D VCRL K+IYGL+Q+PR WY+ T++L
Subjt: GYTQKEGVDFNEIFSPVVRHSSIRLILSIVVHFDMFIEQMDVTTTFLHGELEKVIYMAQPKGYEVKGKEDMVCRLHKSIYGLRQSPRQWYIRFDTFILKQ
Query: GFHRNSYDACVYWKLSQRG-TFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKA
GF + D ++ + QRG + IY+L+YVDD+++ D + LS F +K+ L LG++ KR + L +SQ Y + LL + NM K
Subjt: GFHRNSYDACVYWKLSQRG-TFIYLLLYVDDMILVSKDYAEICQLKKQLSSEFEMKDLGKLKRILGMDVKRDREKGLLTVSQESYVIKLLEKYNMSGCKA
Query: VSTPLASHFKL---SSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR----------------------DCDKSVLLK--------
V+TP+A+ KL S ++ P Y VGS+ YL TRPDL +A++ +S+ D + LK
Subjt: VSTPLASHFKL---SSSQCPVIEQERLEMSNIPYCNAVGSIMYLMICTRPDLGHAMSMISR----------------------DCDKSVLLK--------
Query: GFTDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISL----GEAVWLKRIVGEL-LSQEFIPIIHCDSQSAIHLAKNPSHHERSKH
++D D+ D D SW Q V S+TE+EY S+ E W+ ++ EL + P+I+CD+ A +L NP H R KH
Subjt: GFTDVDYDADLDKR---------------SWKVTLQPVVALSTTESEYISL----GEAVWLKRIVGEL-LSQEFIPIIHCDSQSAIHLAKNPSHHERSKH
Query: IDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVL
I + +H+IRN + + +V V + L+D LTK L
Subjt: IDVKFHYIRNVIAQKDVELVKVHYDENLSDMLTKVL
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