CuGenDBv2

Gene ID	CSPI01G22700
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr1:18273044..18275715
RNA-Seq Expression	CSPI01G22700
Synteny	CSPI01G22700
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0056980.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

0.0e+00

69.46

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++E+ + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+K M+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

TYJ97017.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

0.0e+00

69.58

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DH+I+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VFVKE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT Y VVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

0.0e+00

69.69

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

TYK23724.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

0.0e+00

69.81

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+MKKFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

TYK26407.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

0.0e+00

69.69

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UZE8 Ty3/gypsy retrotransposon protein

0.0e+00

71.78

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++E+ + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS  PFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHW+SAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KL AIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYTGVIPDNYAPINESQQSCFWEGMKNDIKLYVDQCH---------------------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFI
        C+P YT             Q   FW+GMK DIK YVD CH                           DI MDFVEGLPRSKG DT+LVVVD LSKYAHFI
Subjt:  CIPHYTGVIPDNYAPINESQQSCFWEGMKNDIKLYVDQCH---------------------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFI

Query:  TLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWY
        TLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+EV+NKCLELYLR  CQEK ++WSDK+AWAEYWY
Subjt:  TLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWY

Query:  NTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFADVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCE
        NTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+MKKFA+++RR+V+FDIGD VYLKLQPYRQQSVAKKRCE
Subjt:  NTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFADVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCE

Query:  KLSPRYFGPYMILGR
        KLSPRYFGPY +LGR
Subjt:  KLSPRYFGPYMILGR

A0A5D3BD16 Ty3/gypsy retrotransposon protein

0.0e+00

69.58

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DH+I+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VFVKE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT Y VVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

A0A5D3DD68 Ty3/gypsy retrotransposon protein

0.0e+00

69.69

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

A0A5D3DJA9 Ty3/gypsy retrotransposon protein

0.0e+00

69.81

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+MKKFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

A0A5D3DRT3 Ty3/gypsy retrotransposon protein

0.0e+00

69.69

Show/hide

Query:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF
        +V +++EE + EF QLQ EF +VF MP  L PMR++DHRI+LKEGTDPINVRPYRYPHAQKNEIE+LVN+ML  GII+PS SPFSS VILVKKKDGGWRF
Subjt:  MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRF

Query:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY
        CVDYRALNRATVPDKFPIPMI +LLDEL+GAS+FSKIDLKSGYHQIRVR+ED+ KTAFRTHEGHYEFLVMPF LTNAP+TFQALMNQVFRPYL KFLLV+
Subjt:  CVDYRALNRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVY

Query:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM
        FDD L+YS+DVETHLEHLTMVFQLLRQHCLFANR+KCHF KDRIEYLGHWVSAKGVEAD EK+KAM+EWP+PKN+RELRGFLGLTGYYRRFVANYGAIA 
Subjt:  FDDTLMYSKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAM

Query:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL
        PL +LTKKNNFRWSEEAT+AFE LK+AMVTLP+L LP+FQLPFE+ETDAS  GL  VL+QNK+ IAYFSQKLSE AREKSVYERELMAIVLAVEKWRHYL
Subjt:  PLMRLTKKNNFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYL

Query:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD
        LGHRFVVYTDQKALRHILEQRE++ GVQKW+MKL+GFDF                                         EVQ D KLKAIF R++ADPD
Subjt:  LGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDF-----------------------------------------EVQEDTKLKAIFVRLLADPD

Query:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------
        C+P YT                    IP      ++S                   FW+GMK DIK YVD CH                           
Subjt:  CIPHYT------------------GVIPDNYAPINES---------------QQSCFWEGMKNDIKLYVDQCH---------------------------

Query:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        DI MDFVEGLPRSKG DT+LVVVDRLSKYAHFITLGHPFSA+ VA+VF+KE+VRLHGYPRSIVSDRDRVFLSHFW+EL+RLQGTQLKRST YHPQTDGQ+
Subjt:  DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA
        EV+NKCLELYLR  CQEK ++WSDK+AWAEYWYNTNYQSSIKNT YAVVYGQPPPPIISYGQ                               E+M+KFA
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQA------------------------------EQMKKFA

Query:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR
        +++RR+V+FDIGD VYLKLQPYRQQSVAKKRCEKLSPRYFGPY +LGR
Subjt:  DVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGR

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

7.0e-91

27.72

Show/hide

Query:  PEFEQLQLEFENV---FNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRAL
        PE   +  EF+++    N      P++ ++  ++L +    + +R Y  P  +   +   +N+ L  GII+ S +  +  V+ V KK+G  R  VDY+ L
Subjt:  PEFEQLQLEFENV---FNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRAL

Query:  NRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMY
        N+   P+ +P+P+I QLL ++ G+++F+K+DLKS YH IRVR  D  K AFR   G +E+LVMP+ ++ AP+ FQ  +N +        ++ Y DD L++
Subjt:  NRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMY

Query:  SKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTK
        SK    H++H+  V Q L+   L  N+ KC F + +++++G+ +S KG     E +  +L+W  PKN +ELR FLG   Y R+F+     +  PL  L K
Subjt:  SKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTK

Query:  KN-NFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKK-----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLL
        K+  ++W+   TQA E +K+ +V+ P+L   +F     +ETDAS   +  VLSQ         + Y+S K+S+A    SV ++E++AI+ +++ WRHYL 
Subjt:  KN-NFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKK-----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLL

Query:  G--HRFVVYTDQKAL--RHILEQRELILGVQKWIMKLMGFDFEVQ------------------------EDTKLKAI-FVRLLADPD-----CIPHYT--
             F + TD + L  R   E       + +W + L  F+FE+                         +D++  +I FV  ++  D      +  YT  
Subjt:  G--HRFVVYTDQKAL--RHILEQRELILGVQKWIMKLMGFDFEVQ------------------------EDTKLKAI-FVRLLADPD-----CIPHYT--

Query:  ----------------------GVIPDNYAPI---NESQ----------------------------QSCFWEGMKNDIKLYVDQCH-------------
                              G++ ++   I   N++Q                            +   W+G++  I+ YV  CH             
Subjt:  ----------------------GVIPDNYAPI---NESQ----------------------------QSCFWEGMKNDIKLYVDQCH-------------

Query:  --------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQL
                       + MDF+  LP S G + + VVVDR SK A  +      +A+  A +F + ++   G P+ I++D D +F S  WK+        +
Subjt:  --------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQL

Query:  KRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPP------PIISYGQAE----------------
        K S  Y PQTDGQ+E  N+ +E  LR  C   P TW D I+  +  YN    S+ + T + +V+   P       P  S    E                
Subjt:  KRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPP------PIISYGQAE----------------

Query:  -----QMKKFADVYRRNV-IFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQ
             +MKK+ D+  + +  F  GD V +K    R ++    +  KL+P + GP+ +L +     +GP  NY+
Subjt:  -----QMKKFADVYRRNV-IFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQ

P0CT35 Transposon Tf2-2 polyprotein

7.0e-91

27.72

Show/hide

Query:  PEFEQLQLEFENV---FNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRAL
        PE   +  EF+++    N      P++ ++  ++L +    + +R Y  P  +   +   +N+ L  GII+ S +  +  V+ V KK+G  R  VDY+ L
Subjt:  PEFEQLQLEFENV---FNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRAL

Query:  NRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMY
        N+   P+ +P+P+I QLL ++ G+++F+K+DLKS YH IRVR  D  K AFR   G +E+LVMP+ ++ AP+ FQ  +N +        ++ Y DD L++
Subjt:  NRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMY

Query:  SKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTK
        SK    H++H+  V Q L+   L  N+ KC F + +++++G+ +S KG     E +  +L+W  PKN +ELR FLG   Y R+F+     +  PL  L K
Subjt:  SKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTK

Query:  KN-NFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKK-----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLL
        K+  ++W+   TQA E +K+ +V+ P+L   +F     +ETDAS   +  VLSQ         + Y+S K+S+A    SV ++E++AI+ +++ WRHYL 
Subjt:  KN-NFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKK-----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLL

Query:  G--HRFVVYTDQKAL--RHILEQRELILGVQKWIMKLMGFDFEVQ------------------------EDTKLKAI-FVRLLADPD-----CIPHYT--
             F + TD + L  R   E       + +W + L  F+FE+                         +D++  +I FV  ++  D      +  YT  
Subjt:  G--HRFVVYTDQKAL--RHILEQRELILGVQKWIMKLMGFDFEVQ------------------------EDTKLKAI-FVRLLADPD-----CIPHYT--

Query:  ----------------------GVIPDNYAPI---NESQ----------------------------QSCFWEGMKNDIKLYVDQCH-------------
                              G++ ++   I   N++Q                            +   W+G++  I+ YV  CH             
Subjt:  ----------------------GVIPDNYAPI---NESQ----------------------------QSCFWEGMKNDIKLYVDQCH-------------

Query:  --------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQL
                       + MDF+  LP S G + + VVVDR SK A  +      +A+  A +F + ++   G P+ I++D D +F S  WK+        +
Subjt:  --------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQL

Query:  KRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPP------PIISYGQAE----------------
        K S  Y PQTDGQ+E  N+ +E  LR  C   P TW D I+  +  YN    S+ + T + +V+   P       P  S    E                
Subjt:  KRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPP------PIISYGQAE----------------

Query:  -----QMKKFADVYRRNV-IFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQ
             +MKK+ D+  + +  F  GD V +K    R ++    +  KL+P + GP+ +L +     +GP  NY+
Subjt:  -----QMKKFADVYRRNV-IFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQ

P0CT41 Transposon Tf2-12 polyprotein

7.0e-91

27.72

Show/hide

Query:  PEFEQLQLEFENV---FNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRAL
        PE   +  EF+++    N      P++ ++  ++L +    + +R Y  P  +   +   +N+ L  GII+ S +  +  V+ V KK+G  R  VDY+ L
Subjt:  PEFEQLQLEFENV---FNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRAL

Query:  NRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMY
        N+   P+ +P+P+I QLL ++ G+++F+K+DLKS YH IRVR  D  K AFR   G +E+LVMP+ ++ AP+ FQ  +N +        ++ Y DD L++
Subjt:  NRATVPDKFPIPMI-QLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMY

Query:  SKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTK
        SK    H++H+  V Q L+   L  N+ KC F + +++++G+ +S KG     E +  +L+W  PKN +ELR FLG   Y R+F+     +  PL  L K
Subjt:  SKDVETHLEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTK

Query:  KN-NFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKK-----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLL
        K+  ++W+   TQA E +K+ +V+ P+L   +F     +ETDAS   +  VLSQ         + Y+S K+S+A    SV ++E++AI+ +++ WRHYL 
Subjt:  KN-NFRWSEEATQAFEFLKKAMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQNKK-----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLL

Query:  G--HRFVVYTDQKAL--RHILEQRELILGVQKWIMKLMGFDFEVQ------------------------EDTKLKAI-FVRLLADPD-----CIPHYT--
             F + TD + L  R   E       + +W + L  F+FE+                         +D++  +I FV  ++  D      +  YT  
Subjt:  G--HRFVVYTDQKAL--RHILEQRELILGVQKWIMKLMGFDFEVQ------------------------EDTKLKAI-FVRLLADPD-----CIPHYT--

Query:  ----------------------GVIPDNYAPI---NESQ----------------------------QSCFWEGMKNDIKLYVDQCH-------------
                              G++ ++   I   N++Q                            +   W+G++  I+ YV  CH             
Subjt:  ----------------------GVIPDNYAPI---NESQ----------------------------QSCFWEGMKNDIKLYVDQCH-------------

Query:  --------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQL
                       + MDF+  LP S G + + VVVDR SK A  +      +A+  A +F + ++   G P+ I++D D +F S  WK+        +
Subjt:  --------------DIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQL

Query:  KRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPP------PIISYGQAE----------------
        K S  Y PQTDGQ+E  N+ +E  LR  C   P TW D I+  +  YN    S+ + T + +V+   P       P  S    E                
Subjt:  KRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPP------PIISYGQAE----------------

Query:  -----QMKKFADVYRRNV-IFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQ
             +MKK+ D+  + +  F  GD V +K    R ++    +  KL+P + GP+ +L +     +GP  NY+
Subjt:  -----QMKKFADVYRRNV-IFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQ

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

7.5e-93

31.05

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Query:  PAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMI-QLLD
        PA+++ +  V H I++K G     ++PY      + EI K+V ++LD   I PS SP SS V+LV KKDG +R CVDYR LN+AT+ D FP+P I  LL 
Subjt:  PAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMI-QLLD

Query:  ELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMYSKDVETHLEHLTMVFQLLR
         +  A +F+ +DL SGYHQI +  +D  KTAF T  G YE+ VMPF L NAPSTF   M   FR   L+F+ VY DD L++S+  E H +HL  V + L+
Subjt:  ELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMYSKDVETHLEHLTMVFQLLR

Query:  QHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFRWSEEATQAFEFLKK
           L   +KKC F  +  E+LG+ +  + +     K  A+ ++P PK V++ + FLG+  YYRRF+ N   IA P+ +L   +  +W+E+  +A E LK 
Subjt:  QHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFRWSEEATQAFEFLKK

Query:  AMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQ--NKK----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQ
        A+   P+LV  N +  + + TDAS  G+  VL +  NK     ++ YFS+ L  A +     E EL+ I+ A+  +R+ L G  F + TD  +L  +  +
Subjt:  AMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQ--NKK----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQ

Query:  RELILGVQKWIMKLMGFDF---------EVQEDTKLKAIFV----------------RLLADPDC---IPHYTGVIPDNYAPINES--------------
         E    VQ+W+  L  +DF          V  D   +AI+                    +DP C   + H   +   N  P + S              
Subjt:  RELILGVQKWIMKLMGFDF---------EVQEDTKLKAIFV----------------RLLADPDC---IPHYTGVIPDNYAPINES--------------

Query:  -----------------------QQSC----------------------------FWEGMKNDIKLYVDQC---------------------------HD
                               QQ+                             +W  +++ I  Y+  C                            D
Subjt:  -----------------------QQSC----------------------------FWEGMKNDIKLYVDQC---------------------------HD

Query:  IFMDFVEGL-PRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        I MDFV GL P S  ++ +LVVVDR SK AHFI       A  +  +  + I   HG+PR+I SDRD    +  ++EL +  G +   S+  HPQTDGQS
Subjt:  IFMDFVEGL-PRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQ-PPPPIISYGQAEQMKKFADV
        E   + L   LR +     + W   +   E+ YN+    ++  + + +  G  P  P I        + F  V
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQ-PPPPIISYGQAEQMKKFADV

Q99315 Transposon Ty3-G Gag-Pol polyprotein

1.7e-92

30.79

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Query:  PAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMI-QLLD
        PA+++ +  V H I++K G     ++PY      + EI K+V ++LD   I PS SP SS V+LV KKDG +R CVDYR LN+AT+ D FP+P I  LL 
Subjt:  PAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRALNRATVPDKFPIPMI-QLLD

Query:  ELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMYSKDVETHLEHLTMVFQLLR
         +  A +F+ +DL SGYHQI +  +D  KTAF T  G YE+ VMPF L NAPSTF   M   FR   L+F+ VY DD L++S+  E H +HL  V + L+
Subjt:  ELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMYSKDVETHLEHLTMVFQLLR

Query:  QHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFRWSEEATQAFEFLKK
           L   +KKC F  +  E+LG+ +  + +     K  A+ ++P PK V++ + FLG+  YYRRF+ N   IA P+ +L   +  +W+E+  +A + LK 
Subjt:  QHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFRWSEEATQAFEFLKK

Query:  AMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQ--NKK----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQ
        A+   P+LV  N +  + + TDAS  G+  VL +  NK     ++ YFS+ L  A +     E EL+ I+ A+  +R+ L G  F + TD  +L  +  +
Subjt:  AMVTLPILVLPNFQLPFEIETDASWFGLSVVLSQ--NKK----LIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQ

Query:  RELILGVQKWIMKLMGFDF---------EVQEDTKLKAIFV----------------RLLADPDC---IPHYTGVIPDNYAPINES--------------
         E    VQ+W+  L  +DF          V  D   +A++                    +DP C   + H   +   N  P + S              
Subjt:  RELILGVQKWIMKLMGFDF---------EVQEDTKLKAIFV----------------RLLADPDC---IPHYTGVIPDNYAPINES--------------

Query:  -----------------------QQSC----------------------------FWEGMKNDIKLYVDQC---------------------------HD
                               QQ+                             +W  +++ I  Y+  C                            D
Subjt:  -----------------------QQSC----------------------------FWEGMKNDIKLYVDQC---------------------------HD

Query:  IFMDFVEGL-PRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS
        I MDFV GL P S  ++ +LVVVDR SK AHFI       A  +  +  + I   HG+PR+I SDRD    +  ++EL +  G +   S+  HPQTDGQS
Subjt:  IFMDFVEGL-PRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEIVRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQS

Query:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQ-PPPPIISYGQAEQMKKFADV
        E   + L   LR +     + W   +   E+ YN+    ++  + + +  G  P  P I        + F  V
Subjt:  EVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQ-PPPPIISYGQAEQMKKFADV

Arabidopsis top hits

e value

%identity

Alignment

ATMG00850.1 DNA/RNA polymerases superfamily protein

3.2e-06

56.41

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Query:  QKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGW
        ++  ++  + EML+  IIQPSISP+SS V+LV+KKDGGW
Subjt:  QKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGW

ATMG00860.1 DNA/RNA polymerases superfamily protein

2.7e-37

57.25

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Query:  LEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLG--HWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFR
        + HL MV Q+  QH  +ANRKKC F + +I YLG  H +S +GV AD  K++AM+ WP PKN  ELRGFLGLTGYYRRFV NYG I  PL  L KKN+ +
Subjt:  LEHLTMVFQLLRQHCLFANRKKCHFVKDRIEYLG--HWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFR

Query:  WSEEATQAFEFLKKAMVTLPILVLPNFQLPF
        W+E A  AF+ LK A+ TLP+L LP+ +LPF
Subjt:  WSEEATQAFEFLKKAMVTLPILVLPNFQLPF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGTTAAGGAATCTATGGAAGAACTTCGACCAGAATTTGAGCAATTACAACTGGAGTTTGAGAATGTGTTTAATATGCCGGCAGAGCTTTCCCCAATGAGACAGGTTGA
CCACCGAATCAAATTGAAGGAGGGCACAGACCCCATCAACGTGAGACCTTACCGCTACCCACATGCTCAGAAGAATGAAATTGAGAAGCTGGTGAATGAGATGCTCGATT
TTGGTATTATACAGCCAAGCATTAGTCCTTTCTCTAGTCTCGTGATCTTAGTGAAAAAGAAGGATGGGGGATGGAGATTCTGCGTTGATTATAGAGCGTTGAATAGAGCA
ACGGTACCCGATAAATTTCCAATTCCTATGATTCAGTTGTTGGATGAGTTGAATGGGGCAAGTGTTTTCTCTAAGATAGATTTGAAATCGGGGTATCACCAAATTAGGGT
GCGCAATGAGGATGTGAGAAAGACTGCTTTTCGAACGCACGAGGGGCACTACGAATTCCTAGTCATGCCATTCGAACTCACCAATGCACCCTCGACGTTCCAAGCCCTTA
TGAATCAGGTTTTTCGACCCTATCTACTTAAATTCTTGCTAGTATATTTTGACGATACTCTCATGTACAGCAAGGATGTGGAAACTCATTTGGAGCATCTTACAATGGTG
TTTCAACTATTAAGACAGCACTGCCTGTTTGCGAACCGGAAGAAGTGCCACTTCGTCAAAGATCGTATTGAATATTTGGGTCATTGGGTCTCAGCCAAGGGGGTAGAGGC
TGACCATGAAAAGGTTAAAGCTATGTTGGAGTGGCCTGTGCCGAAGAATGTAAGGGAACTTAGGGGTTTTTTGGGGTTGACCGGGTATTATCGCCGATTTGTAGCAAACT
ATGGCGCCATTGCCATGCCCCTTATGCGATTGACCAAGAAAAATAATTTTCGTTGGTCGGAAGAAGCAACCCAAGCATTTGAATTCCTCAAGAAAGCCATGGTTACGCTG
CCTATTCTAGTACTGCCGAATTTCCAGCTACCTTTCGAAATTGAAACAGATGCATCATGGTTCGGACTAAGTGTGGTCTTGTCTCAGAACAAGAAGCTGATTGCGTACTT
CAGTCAAAAACTATCAGAAGCAGCACGTGAAAAATCTGTTTACGAGAGGGAGCTCATGGCCATAGTCCTAGCAGTGGAAAAATGGCGGCACTACTTGTTGGGCCATCGTT
TTGTGGTGTATACTGATCAGAAGGCATTGAGGCATATCCTAGAACAGAGGGAGTTAATACTGGGTGTTCAAAAGTGGATAATGAAGTTAATGGGGTTTGACTTTGAAGTT
CAAGAGGATACGAAACTAAAGGCTATTTTCGTTCGATTGTTAGCAGATCCGGATTGCATTCCTCACTATACAGGGGTCATTCCGGACAATTATGCACCTATAAACGAATC
GCAGCAGAGTTGTTTTTGGGAAGGAATGAAGAATGATATTAAATTATATGTGGATCAGTGTCATGATATTTTCATGGATTTTGTGGAGGGATTACCACGTTCCAAGGGGG
TCGACACCGTATTGGTGGTAGTGGATCGCCTAAGCAAATATGCTCACTTCATAACCTTGGGTCATCCATTCTCGGCCCAAACAGTAGCTATGGTGTTTGTCAAAGAGATA
GTGCGCCTTCACGGATATCCTCGTTCAATAGTATCTGATCGAGATCGAGTGTTCCTAAGTCACTTTTGGAAAGAGTTATACCGATTGCAAGGTACCCAACTAAAGAGAAG
CACGACATACCATCCACAAACAGATGGGCAGTCGGAGGTTATTAACAAATGTTTAGAGCTGTATTTAAGATGGTTTTGCCAAGAGAAACCGAGGACATGGAGCGATAAGA
TTGCGTGGGCCGAGTATTGGTACAATACCAACTACCAATCTTCGATAAAAAACACCCTTTATGCTGTAGTTTATGGACAGCCCCCTCCACCTATCATCTCTTATGGCCAG
GCAGAACAAATGAAGAAGTTTGCCGATGTGTACCGTCGCAATGTGATTTTTGACATTGGGGACTGGGTGTATCTGAAATTACAGCCCTATAGGCAGCAGTCAGTAGCGAA
GAAGCGTTGTGAGAAATTATCTCCTAGATATTTTGGGCCATACATGATATTGGGTCGGAGAAGTAGCTTACATGCTGGACCTACCAAAAACTACCAAAATACATCCGGTT
TTCCATGTATCACAACTCAAGAAGGCGGTGGGAGACTAACATCAAATTCAACTGGACATAGCAATGCTCAATGA

mRNA sequence

Show/hide mRNA sequence

GCCTTGGGCATCTAAAAACGGATAGACAGATCATGGTTAAGGAATCTATGGAAGAACTTCGACCAGAATTTGAGCAATTACAACTGGAGTTTGAGAATGTGTTTAATATG
CCGGCAGAGCTTTCCCCAATGAGACAGGTTGACCACCGAATCAAATTGAAGGAGGGCACAGACCCCATCAACGTGAGACCTTACCGCTACCCACATGCTCAGAAGAATGA
AATTGAGAAGCTGGTGAATGAGATGCTCGATTTTGGTATTATACAGCCAAGCATTAGTCCTTTCTCTAGTCTCGTGATCTTAGTGAAAAAGAAGGATGGGGGATGGAGAT
TCTGCGTTGATTATAGAGCGTTGAATAGAGCAACGGTACCCGATAAATTTCCAATTCCTATGATTCAGTTGTTGGATGAGTTGAATGGGGCAAGTGTTTTCTCTAAGATA
GATTTGAAATCGGGGTATCACCAAATTAGGGTGCGCAATGAGGATGTGAGAAAGACTGCTTTTCGAACGCACGAGGGGCACTACGAATTCCTAGTCATGCCATTCGAACT
CACCAATGCACCCTCGACGTTCCAAGCCCTTATGAATCAGGTTTTTCGACCCTATCTACTTAAATTCTTGCTAGTATATTTTGACGATACTCTCATGTACAGCAAGGATG
TGGAAACTCATTTGGAGCATCTTACAATGGTGTTTCAACTATTAAGACAGCACTGCCTGTTTGCGAACCGGAAGAAGTGCCACTTCGTCAAAGATCGTATTGAATATTTG
GGTCATTGGGTCTCAGCCAAGGGGGTAGAGGCTGACCATGAAAAGGTTAAAGCTATGTTGGAGTGGCCTGTGCCGAAGAATGTAAGGGAACTTAGGGGTTTTTTGGGGTT
GACCGGGTATTATCGCCGATTTGTAGCAAACTATGGCGCCATTGCCATGCCCCTTATGCGATTGACCAAGAAAAATAATTTTCGTTGGTCGGAAGAAGCAACCCAAGCAT
TTGAATTCCTCAAGAAAGCCATGGTTACGCTGCCTATTCTAGTACTGCCGAATTTCCAGCTACCTTTCGAAATTGAAACAGATGCATCATGGTTCGGACTAAGTGTGGTC
TTGTCTCAGAACAAGAAGCTGATTGCGTACTTCAGTCAAAAACTATCAGAAGCAGCACGTGAAAAATCTGTTTACGAGAGGGAGCTCATGGCCATAGTCCTAGCAGTGGA
AAAATGGCGGCACTACTTGTTGGGCCATCGTTTTGTGGTGTATACTGATCAGAAGGCATTGAGGCATATCCTAGAACAGAGGGAGTTAATACTGGGTGTTCAAAAGTGGA
TAATGAAGTTAATGGGGTTTGACTTTGAAGTTCAAGAGGATACGAAACTAAAGGCTATTTTCGTTCGATTGTTAGCAGATCCGGATTGCATTCCTCACTATACAGGGGTC
ATTCCGGACAATTATGCACCTATAAACGAATCGCAGCAGAGTTGTTTTTGGGAAGGAATGAAGAATGATATTAAATTATATGTGGATCAGTGTCATGATATTTTCATGGA
TTTTGTGGAGGGATTACCACGTTCCAAGGGGGTCGACACCGTATTGGTGGTAGTGGATCGCCTAAGCAAATATGCTCACTTCATAACCTTGGGTCATCCATTCTCGGCCC
AAACAGTAGCTATGGTGTTTGTCAAAGAGATAGTGCGCCTTCACGGATATCCTCGTTCAATAGTATCTGATCGAGATCGAGTGTTCCTAAGTCACTTTTGGAAAGAGTTA
TACCGATTGCAAGGTACCCAACTAAAGAGAAGCACGACATACCATCCACAAACAGATGGGCAGTCGGAGGTTATTAACAAATGTTTAGAGCTGTATTTAAGATGGTTTTG
CCAAGAGAAACCGAGGACATGGAGCGATAAGATTGCGTGGGCCGAGTATTGGTACAATACCAACTACCAATCTTCGATAAAAAACACCCTTTATGCTGTAGTTTATGGAC
AGCCCCCTCCACCTATCATCTCTTATGGCCAGGCAGAACAAATGAAGAAGTTTGCCGATGTGTACCGTCGCAATGTGATTTTTGACATTGGGGACTGGGTGTATCTGAAA
TTACAGCCCTATAGGCAGCAGTCAGTAGCGAAGAAGCGTTGTGAGAAATTATCTCCTAGATATTTTGGGCCATACATGATATTGGGTCGGAGAAGTAGCTTACATGCTGG
ACCTACCAAAAACTACCAAAATACATCCGGTTTTCCATGTATCACAACTCAAGAAGGCGGTGGGAGACTAACATCAAATTCAACTGGACATAGCAATGCTCAATGA

Protein sequence

Show/hide protein sequence

MVKESMEELRPEFEQLQLEFENVFNMPAELSPMRQVDHRIKLKEGTDPINVRPYRYPHAQKNEIEKLVNEMLDFGIIQPSISPFSSLVILVKKKDGGWRFCVDYRALNRA
TVPDKFPIPMIQLLDELNGASVFSKIDLKSGYHQIRVRNEDVRKTAFRTHEGHYEFLVMPFELTNAPSTFQALMNQVFRPYLLKFLLVYFDDTLMYSKDVETHLEHLTMV
FQLLRQHCLFANRKKCHFVKDRIEYLGHWVSAKGVEADHEKVKAMLEWPVPKNVRELRGFLGLTGYYRRFVANYGAIAMPLMRLTKKNNFRWSEEATQAFEFLKKAMVTL
PILVLPNFQLPFEIETDASWFGLSVVLSQNKKLIAYFSQKLSEAAREKSVYERELMAIVLAVEKWRHYLLGHRFVVYTDQKALRHILEQRELILGVQKWIMKLMGFDFEV
QEDTKLKAIFVRLLADPDCIPHYTGVIPDNYAPINESQQSCFWEGMKNDIKLYVDQCHDIFMDFVEGLPRSKGVDTVLVVVDRLSKYAHFITLGHPFSAQTVAMVFVKEI
VRLHGYPRSIVSDRDRVFLSHFWKELYRLQGTQLKRSTTYHPQTDGQSEVINKCLELYLRWFCQEKPRTWSDKIAWAEYWYNTNYQSSIKNTLYAVVYGQPPPPIISYGQ
AEQMKKFADVYRRNVIFDIGDWVYLKLQPYRQQSVAKKRCEKLSPRYFGPYMILGRRSSLHAGPTKNYQNTSGFPCITTQEGGGRLTSNSTGHSNAQ

CSPI01G22700 (gene) of Cucumber (PI 183967) v1 genome