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CSPI01G23000 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G23000
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationChr1:18667589..18667975
RNA-Seq ExpressionCSPI01G23000
SyntenyCSPI01G23000
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004153928.3 RING-H2 finger protein ATL67 [Cucumis sativus]5.0e-6396.09Show/hide
Query:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT
        MVLMTVSMLLLIVLFLFIAILCTKRSAK DGEESSDNLDIEAPIFHYSGVES EQECAICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRT
Subjt:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT

Query:  SVCMVVIDHGGNAMASSSSLPTPFINRI
        SVCMVVID GGNAMASSSSLPTPFINRI
Subjt:  SVCMVVIDHGGNAMASSSSLPTPFINRI

XP_011648512.2 RING-H2 finger protein ATL79 [Cucumis sativus]1.6e-6193.75Show/hide
Query:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT
        MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESS+NLDIEAPIFHYSGVE DEQEC ICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRT
Subjt:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT

Query:  SVCMVVIDHGGNAMASSSSLPTPFINRI
        SVCMVVID GGNAMASSSSL TPFIN+I
Subjt:  SVCMVVIDHGGNAMASSSSLPTPFINRI

XP_011648513.1 RING-H2 finger protein ATL39 [Cucumis sativus]1.5e-4674.19Show/hide
Query:  LMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        L+  SM L IVL LFI+ILC KRSAKSD EE  +N+DIEAPIFHY G E  EQ+CAICLCEIEEGEKCRK+K+CGHVFHKDCI RWFKV+GHCPICRTSV
Subjt:  LMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

Query:  CMVVIDHGGNAMASSSSLPTPFIN
        C+VV+D GGNA+ SS+SL  P++N
Subjt:  CMVVIDHGGNAMASSSSLPTPFIN

XP_011659772.1 RING-H2 finger protein ATL39 [Cucumis sativus]1.4e-5786.72Show/hide
Query:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT
        M L+TV MLLLIVLF FI ILC KRSAKSDGEE  +NLDIEAPIFHY+GVE DEQECAICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKV+GHCPICRT
Subjt:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT

Query:  SVCMVVIDHGGNAMASSSSLPTPFINRI
        SVC+VV+DHGGNAMASSSSLPTPFIN+I
Subjt:  SVCMVVIDHGGNAMASSSSLPTPFINRI

XP_011659858.1 E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]5.8e-5989.84Show/hide
Query:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT
        MVL+T+SMLLLIVLFLFIAILCTKRSAKSD EE S+NLDIEAPIFHY+ VE  EQECAICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRT
Subjt:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT

Query:  SVCMVVIDHGGNAMASSSSLPTPFINRI
        SVC+VVID GGNAMASSSSLPTPFINRI
Subjt:  SVCMVVIDHGGNAMASSSSLPTPFINRI

TrEMBL top hitse value%identityAlignment
A0A0A0K790 RING-type domain-containing protein6.9e-5886.72Show/hide
Query:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT
        M L+TV MLLLIVLF FI ILC KRSAKSDGEE  +NLDIEAPIFHY+GVE DEQECAICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKV+GHCPICRT
Subjt:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT

Query:  SVCMVVIDHGGNAMASSSSLPTPFINRI
        SVC+VV+DHGGNAMASSSSLPTPFIN+I
Subjt:  SVCMVVIDHGGNAMASSSSLPTPFINRI

A0A0A0LUU6 RING-type E3 ubiquitin transferase2.1e-6294.53Show/hide
Query:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT
        MVLMTVSMLLLIVLFLFIAILCTKRSAK DGEESSDNLDIEAPIFHYSGVE  EQEC ICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKVNGHCPICRT
Subjt:  MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRT

Query:  SVCMVVIDHGGNAMASSSSLPTPFINRI
        SVCMVVID GGNAMASSSSLPTPFINRI
Subjt:  SVCMVVIDHGGNAMASSSSLPTPFINRI

A0A0A0LY10 RING-type E3 ubiquitin transferase7.1e-4774.19Show/hide
Query:  LMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        L+  SM L IVL LFI+ILC KRSAKSD EE  +N+DIEAPIFHY G E  EQ+CAICLCEIEEGEKCRK+K+CGHVFHKDCI RWFKV+GHCPICRTSV
Subjt:  LMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

Query:  CMVVIDHGGNAMASSSSLPTPFIN
        C+VV+D GGNA+ SS+SL  P++N
Subjt:  CMVVIDHGGNAMASSSSLPTPFIN

A0A0A0LY13 RING-type E3 ubiquitin transferase3.5e-4674.38Show/hide
Query:  VSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMV
        VSM L IVL  FI+I+C+KR AKSD EE   N+D+EA +FHY+G E  EQE AICLCEIEEGEKCRK+K+CGHVFHKDCIDRWFKV+ HCPICRTSVC+V
Subjt:  VSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMV

Query:  VIDHGGNAMASSSSLPTPFIN
        V+DHGGNAMASS+SLP P++N
Subjt:  VIDHGGNAMASSSSLPTPFIN

A0A5D3BEE2 RING-type E3 ubiquitin transferase1.0e-4075.21Show/hide
Query:  LMTVSMLLLIVLFLFIAILCTKRSAKSDGEES-SDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTS
        L+ +SMLLL+VL L I ILC KRSAKSD EES S N+DI+APIFHYS     EQECAICLCEIEEGEKCRK+K+CGHVFHKDCIDRWF V  HCP+CRTS
Subjt:  LMTVSMLLLIVLFLFIAILCTKRSAKSDGEES-SDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTS

Query:  VCMVVIDHGGNAMASSSSLPT
        VC VV+D   NAMASSSS PT
Subjt:  VCMVVIDHGGNAMASSSSLPT

SwissProt top hitse value%identityAlignment
O22255 RING-H2 finger protein ATL648.5e-1341.86Show/hide
Query:  PIFHYSGVE----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV--CMVVIDHGGNAMASSSSLPT
        PIF YS        +++EC++CL E EE ++ R L  CGH FH DCID WF+    CP+CR  V     VI+ G ++ +S  + PT
Subjt:  PIFHYSGVE----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV--CMVVIDHGGNAMASSSSLPT

P93823 RING-H2 finger protein ATL12.1e-1156Show/hide
Query:  DEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        + QEC++CL E +E EK R + +C HVFH DCID W + N +CP+CRTSV
Subjt:  DEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

Q8W571 RING-H2 finger protein ATL321.6e-1141.38Show/hide
Query:  RSAKSDGEESSDNLD---IEA-PIFHYSGVE-----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        R+  +DG      LD   +E+ P+F YS V+     S + ECAICL E+E+ E  R L  C H+FH DCID W   +  CP+CR+++
Subjt:  RSAKSDGEESSDNLD---IEA-PIFHYSGVE-----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

Q940Q4 RING-H2 finger protein ATL132.5e-1242.86Show/hide
Query:  PIFHYS---GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDH
        P+FHY    G+++   +CA+CLCE E  +K R L  C H FH DCID W   +  CP+CR+S+   +  H
Subjt:  PIFHYS---GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDH

Q9LZJ6 RING-H2 finger protein ATL52.5e-1253.23Show/hide
Query:  PIFHYS--GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        PIF YS    ES  +EC++CL E EE ++ R L  CGHVFH DCID WF+    CP+CR  V
Subjt:  PIFHYS--GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

Arabidopsis top hitse value%identityAlignment
AT1G04360.1 RING/U-box superfamily protein1.5e-1256Show/hide
Query:  DEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        + QEC++CL E +E EK R + +C HVFH DCID W + N +CP+CRTSV
Subjt:  DEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

AT2G47560.1 RING/U-box superfamily protein6.0e-1441.86Show/hide
Query:  PIFHYSGVE----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV--CMVVIDHGGNAMASSSSLPT
        PIF YS        +++EC++CL E EE ++ R L  CGH FH DCID WF+    CP+CR  V     VI+ G ++ +S  + PT
Subjt:  PIFHYSGVE----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV--CMVVIDHGGNAMASSSSLPT

AT3G62690.1 AtL51.8e-1353.23Show/hide
Query:  PIFHYS--GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        PIF YS    ES  +EC++CL E EE ++ R L  CGHVFH DCID WF+    CP+CR  V
Subjt:  PIFHYS--GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV

AT4G30400.1 RING/U-box superfamily protein1.8e-1342.86Show/hide
Query:  PIFHYS---GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDH
        P+FHY    G+++   +CA+CLCE E  +K R L  C H FH DCID W   +  CP+CR+S+   +  H
Subjt:  PIFHYS---GVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDH

AT4G40070.1 RING/U-box superfamily protein1.1e-1241.38Show/hide
Query:  RSAKSDGEESSDNLD---IEA-PIFHYSGVE-----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV
        R+  +DG      LD   +E+ P+F YS V+     S + ECAICL E+E+ E  R L  C H+FH DCID W   +  CP+CR+++
Subjt:  RSAKSDGEESSDNLD---IEA-PIFHYSGVE-----SDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGATAA
TTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGTTGA
AGTCGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCACGGT
GGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTGATGACGGTCTCCATGCTTCTTCTCATTGTGCTATTTTTATTCATTGCCATCTTATGTACAAAACGATCAGCCAAATCTGACGGGGAAGAGTCGTCGGATAA
TTTGGACATTGAAGCACCGATTTTTCATTACAGCGGAGTTGAAAGCGACGAACAAGAATGTGCGATTTGCCTTTGTGAAATTGAGGAAGGAGAGAAGTGTAGAAAGTTGA
AGTCGTGTGGTCATGTGTTTCACAAAGACTGCATTGACCGGTGGTTTAAGGTGAATGGCCATTGTCCAATTTGTCGGACCTCCGTTTGTATGGTAGTCATTGATCACGGT
GGAAATGCCATGGCTTCTTCTTCATCTTTACCGACCCCCTTCATCAACCGAATTTAA
Protein sequenceShow/hide protein sequence
MVLMTVSMLLLIVLFLFIAILCTKRSAKSDGEESSDNLDIEAPIFHYSGVESDEQECAICLCEIEEGEKCRKLKSCGHVFHKDCIDRWFKVNGHCPICRTSVCMVVIDHG
GNAMASSSSLPTPFINRI