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CSPI01G23050 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G23050
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING-type E3 ubiquitin transferase
Genome locationChr1:18714439..18714885
RNA-Seq ExpressionCSPI01G23050
SyntenyCSPI01G23050
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type
IPR044675 - E3 ubiquitin-protein ligase RING1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067736.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]1.8e-5176.03Show/hide
Query:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY
        MG LFVSV+CII+IIFLFH YHYRLRL+QTRTLDIE+RL+EHRT QL  Q QA+I+ QRQT T  N+T EGEE SSA+MTVAY VKD    GSYCCCAI 
Subjt:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY

Query:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS
        IEEF     CGVVESCGHCFH DCMD WL+IESRCPLCRCLVHAVS
Subjt:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS

KAG6583431.1 RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2046.75Show/hide
Query:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY---TVKDEAGSY
        MG++ +S I IIV   IF+F  YH  L   QTR LD+E+    +  T+LF + +A+ + Q+Q+       +NT E EE +S +  VAY      +EA S 
Subjt:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY---TVKDEAGSY

Query:  CCCAIYI-----EEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN
         CCAI I     EE CGV++ CGHCFH  C+D WL IESRCPLCRCLV  VS N
Subjt:  CCCAIYI-----EEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN

KAG7019192.1 E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma]6.1e-2046.1Show/hide
Query:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY---TVKDEAGSY
        MG++ +S I I V   IF+F  YH  L   QTR LD+E+    +  T+LF + +A+ + Q+Q+       +NT E EE +S +  VAY      +EA S 
Subjt:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY---TVKDEAGSY

Query:  CCCAIYI-----EEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN
         CCAI I     EE CGV++ CGHCFH  C+D WL IESRCPLCRCLV  VS N
Subjt:  CCCAIYI-----EEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN

TYJ97407.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]8.7e-5175.34Show/hide
Query:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY
        MG LFVSV+CII+IIFLFH YHYRLRL+QTRTLDIE+RL+EHRT QL  Q QA+I+ QRQT T  N+T EGEE SSA+M VAY VKD    GSYCCCAI 
Subjt:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY

Query:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS
        IEEF     CGVVESCGHCFH DCMD WL+IESRCPLCRCLVHAVS
Subjt:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS

XP_016902103.1 PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo]3.8e-3072.28Show/hide
Query:  QLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAV
        QL  Q QA+I+ QRQT T  N+T EGEE SSA+M VAY VKD    GSYCCCAI IEEF     CGVVESCGHCFH DCMD WL+IESRCPLCRCLVHAV
Subjt:  QLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAV

Query:  S
        S
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A1S4E1K2 RING-type E3 ubiquitin transferase1.8e-3072.28Show/hide
Query:  QLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAV
        QL  Q QA+I+ QRQT T  N+T EGEE SSA+M VAY VKD    GSYCCCAI IEEF     CGVVESCGHCFH DCMD WL+IESRCPLCRCLVHAV
Subjt:  QLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAV

Query:  S
        S
Subjt:  S

A0A5A7VMH1 RING-H2 finger protein ATL52-like8.5e-5276.03Show/hide
Query:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY
        MG LFVSV+CII+IIFLFH YHYRLRL+QTRTLDIE+RL+EHRT QL  Q QA+I+ QRQT T  N+T EGEE SSA+MTVAY VKD    GSYCCCAI 
Subjt:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY

Query:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS
        IEEF     CGVVESCGHCFH DCMD WL+IESRCPLCRCLVHAVS
Subjt:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS

A0A5D3BE50 RING-type E3 ubiquitin transferase4.2e-5175.34Show/hide
Query:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY
        MG LFVSV+CII+IIFLFH YHYRLRL+QTRTLDIE+RL+EHRT QL  Q QA+I+ QRQT T  N+T EGEE SSA+M VAY VKD    GSYCCCAI 
Subjt:  MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRT--NNTMEGEEPSSAIMTVAYTVKDE--AGSYCCCAIY

Query:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS
        IEEF     CGVVESCGHCFH DCMD WL+IESRCPLCRCLVHAVS
Subjt:  IEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS

A0A6J1HJU0 RING-type E3 ubiquitin transferase1.6e-1842.86Show/hide
Query:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY-----TVKDEAG
        MG++ +S I IIV   IF+F  YH  L   QTR LD+E+    +  T+LF + +A+ + Q+Q+       +NT E EE +S +  VAY     T + +  
Subjt:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY-----TVKDEAG

Query:  SYCCCAI---YIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN
         YC   I     EE CGV++ CGHCFH  C+D WL+I SRCPLCRCL+  VS N
Subjt:  SYCCCAI---YIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN

A0A6J1I5C3 RING-type E3 ubiquitin transferase2.5e-1946.1Show/hide
Query:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY---TVKDEAGSY
        MG++ +  I IIV   IF+F  YH R  L QTR LD+E+    +  T+LF + +A+++ Q+Q+        NT E EE +S +  VAY       EA S 
Subjt:  MGILFVSVICIIVI--IFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQT-----RTNNTMEGEEPSSAIMTVAY---TVKDEAGSY

Query:  CCCAIYI-----EEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN
         CCAI I     EE CGVV+ C HCFH  C+D WL I SRCPLCRCLV  VS N
Subjt:  CCCAIYI-----EEFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVSHN

SwissProt top hitse value%identityAlignment
Q9FG21 Putative RING-H2 finger protein ATL715.8e-0533.33Show/hide
Query:  VAYTVKDEAGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCR
        V+Y+++ E+ +  CC+I + ++       V+  C H FH +C+D WL++   CP+CR
Subjt:  VAYTVKDEAGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCR

Q9FL42 Putative RING-H2 finger protein ATL692.6e-0545.24Show/hide
Query:  SYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR
        S C C     E    +  C HCFH DC+D WL+  + CPLCR
Subjt:  SYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR

Q9SN27 E3 ubiquitin-protein ligase ATL591.5e-0545.1Show/hide
Query:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR
        ++TV D   S C      EE    + SCGH FHM+C+D WL   + CPLCR
Subjt:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR

Q9SN28 RING-H2 finger protein ATL71.5e-0545.1Show/hide
Query:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR
        ++ VKD   S C      EE    + SCGH FHM+C+D WL   + CPLCR
Subjt:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR

Q9SRM0 RING-H2 finger protein ATL662.6e-0541.07Show/hide
Query:  KDEAGSYCCCAIYIE--EFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS
        ++E    C C    E  E   V+  C HC+H +C+D WLK ES CPLCR  +   S
Subjt:  KDEAGSYCCCAIYIE--EFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS

Arabidopsis top hitse value%identityAlignment
AT3G11110.1 RING/U-box superfamily protein1.8e-0641.07Show/hide
Query:  KDEAGSYCCCAIYIE--EFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS
        ++E    C C    E  E   V+  C HC+H +C+D WLK ES CPLCR  +   S
Subjt:  KDEAGSYCCCAIYIE--EFCGVVESCGHCFHMDCMDHWLKIESRCPLCRCLVHAVS

AT4G10150.1 RING/U-box superfamily protein1.1e-0645.1Show/hide
Query:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR
        ++ VKD   S C      EE    + SCGH FHM+C+D WL   + CPLCR
Subjt:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR

AT4G10160.1 RING/U-box superfamily protein1.1e-0645.1Show/hide
Query:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR
        ++TV D   S C      EE    + SCGH FHM+C+D WL   + CPLCR
Subjt:  AYTVKDEAGSYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR

AT5G06490.1 RING/U-box superfamily protein4.1e-0633.33Show/hide
Query:  VAYTVKDEAGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCR
        V+Y+++ E+ +  CC+I + ++       V+  C H FH +C+D WL++   CP+CR
Subjt:  VAYTVKDEAGSYCCCAIYIEEF-----CGVVESCGHCFHMDCMDHWLKIESRCPLCR

AT5G07040.1 RING/U-box superfamily protein1.8e-0645.24Show/hide
Query:  SYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR
        S C C     E    +  C HCFH DC+D WL+  + CPLCR
Subjt:  SYCCCAIYIEEFCGVVESCGHCFHMDCMDHWLKIESRCPLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAATCTTGTTTGTGAGCGTCATTTGTATCATTGTAATCATCTTCCTTTTCCATTTCTACCATTACCGCCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGA
ACGACTCTACGAACACCGTACAACGCAACTCTTTACTCAAGTTCAAGCCCAAATCGTAATGCAACGTCAGACTAGAACCAATAACACGATGGAAGGCGAAGAACCTTCTT
CTGCTATCATGACGGTGGCTTACACAGTGAAGGATGAAGCCGGCTCGTACTGTTGCTGTGCCATATACATCGAAGAGTTTTGTGGAGTTGTTGAGAGTTGTGGCCATTGT
TTTCATATGGATTGTATGGATCACTGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGA
AGCTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAATCTTGTTTGTGAGCGTCATTTGTATCATTGTAATCATCTTCCTTTTCCATTTCTACCATTACCGCCTTAGGCTTTCCCAAACAAGAACCCTAGACATCGAGGA
ACGACTCTACGAACACCGTACAACGCAACTCTTTACTCAAGTTCAAGCCCAAATCGTAATGCAACGTCAGACTAGAACCAATAACACGATGGAAGGCGAAGAACCTTCTT
CTGCTATCATGACGGTGGCTTACACAGTGAAGGATGAAGCCGGCTCGTACTGTTGCTGTGCCATATACATCGAAGAGTTTTGTGGAGTTGTTGAGAGTTGTGGCCATTGT
TTTCATATGGATTGTATGGATCACTGGCTTAAGATTGAGAGCCGTTGCCCATTATGTCGTTGTTTGGTTCATGCTGTATCTCATAATATTAGTAATTCCCAAGAAAATGA
AGCTTAG
Protein sequenceShow/hide protein sequence
MGILFVSVICIIVIIFLFHFYHYRLRLSQTRTLDIEERLYEHRTTQLFTQVQAQIVMQRQTRTNNTMEGEEPSSAIMTVAYTVKDEAGSYCCCAIYIEEFCGVVESCGHC
FHMDCMDHWLKIESRCPLCRCLVHAVSHNISNSQENEA