CuGenDBv2

Gene ID	CSPI01G23410
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Elongin-C
Genome location	Chr1:18990448..18992386
RNA-Seq Expression	CSPI01G23410
Synteny	CSPI01G23410
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0006511 - ubiquitin-dependent protein catabolic process (biological process) GO:0070449 - elongin complex (cellular component) GO:0003746 - translation elongation factor activity (molecular function)
InterPro domains	IPR001232 - S-phase kinase-associated protein 1-like IPR011333 - SKP1/BTB/POZ domain superfamily IPR016073 - SKP1 component, POZ domain IPR039948 - Elongin-C

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008457436.1 PREDICTED: transcription elongation factor B polypeptide 1 [Cucumis melo]

1.2e-48

100

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022158132.1 elongin-C [Momordica charantia]

3.5e-48

98.98

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_022964706.1 elongin-C-like [Cucurbita moschata]

3.9e-47

96.94

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_031741205.1 LOW QUALITY PROTEIN: elongin-C [Cucumis sativus]

1.7e-47

97.96

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNL F SGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

XP_038895699.1 elongin-C [Benincasa hispida]

1.7e-47

97.96

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LY44 Elongin-C

5.9e-49

100

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A1S3C6T3 Elongin-C

5.9e-49

100

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1DWE1 Elongin-C

1.7e-48

98.98

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1HJP6 Elongin-C

1.9e-47

96.94

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKE+TVKLISAEGFEF+IHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYF+WNLQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

A0A6J1KFM7 Elongin-C

5.5e-47

96.94

Show/hide

Query:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEIST ILEKICQYF+W+LQFASGKETEFPIEPELTLELMMAANYLHT
Subjt:  MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

SwissProt top hits

e value

%identity

Alignment

P83940 Elongin-C

6.1e-19

47.83

Show/hide

Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

P83941 Elongin-C

6.1e-19

47.83

Show/hide

Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q15369 Elongin-C

6.1e-19

47.83

Show/hide

Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q2KII4 Elongin-C

6.1e-19

47.83

Show/hide

Query:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL
        VKLIS++G EF++ ++ A+ S TI+ ML+ PG FAE++  EV F EI + +L K+C YF + +++  +S +  EFPI PE+ LEL+MAAN+L
Subjt:  VKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQF--ASGKETEFPIEPELTLELMMAANYL

Q9USX9 Elongin-C

1.7e-16

43.16

Show/hide

Query:  KEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL
        +++ V+LIS +GF F++ K+ A +S TIR +L + G F+E+Q  E TFP+I  T+LEK+C+Y H+N ++ +  +  +F I PE+ LEL++ A YL
Subjt:  KEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKE-TEFPIEPELTLELMMAANYL

Arabidopsis top hits

e value

%identity

Alignment

AT5G59140.1 BTB/POZ domain-containing protein

9.3e-39

79.79

Show/hide

Query:  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT
        +TVKLIS EGFEFVI ++AAMVSQTIR+MLTSPG F+ES+   VTFP+ISTTILEKICQYF+W+LQ++ GKETEF IEPELTLELMMAANYLHT
Subjt:  DTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAAGAAGGAAGACACTGTAAAATTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCC
AGGAAATTTTGCTGAATCGCAGCATAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGTG
GGAAAGAGACCGAGTTCCCTATTGAACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGA

mRNA sequence

Show/hide mRNA sequence

GTGATGACAAAGAAGACCAAAACAAGAATCGAAAGCTTTCTCTTCAAAGGGAGAGGGAACAAGCATCTCTCTCAACTACGACCGAAATGAAGAAGGAAGACACTGTAAAA
TTGATCAGCGCTGAAGGTTTCGAGTTCGTGATTCACAAGGATGCTGCCATGGTTTCTCAAACGATTCGAAACATGCTTACTTCCCCAGGAAATTTTGCTGAATCGCAGCA
TAGAGAAGTGACTTTTCCTGAGATTAGTACCACCATTCTCGAGAAGATTTGCCAATATTTTCACTGGAATCTTCAATTCGCGAGTGGGAAAGAGACCGAGTTCCCTATTG
AACCTGAATTGACTCTTGAGTTGATGATGGCTGCCAACTATCTCCATACATGAAATATGTAACCTCTATGCACTCTTCCACCCATTTGACATTGTAATCAGATGGCAATT
TTATGTGATAGATATAGATTTCCTTGACTAATAGATTGTCAGTGAAGTTCATTACAATACTACCCTTGTTTTTTTTTTTTTTTTGGTTTGGGGGGG

Protein sequence

Show/hide protein sequence

MKKEDTVKLISAEGFEFVIHKDAAMVSQTIRNMLTSPGNFAESQHREVTFPEISTTILEKICQYFHWNLQFASGKETEFPIEPELTLELMMAANYLHT

CSPI01G23410 (gene) of Cucumber (PI 183967) v1 genome