; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G23420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G23420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr1:18993725..18997608
RNA-Seq ExpressionCSPI01G23420
SyntenyCSPI01G23420
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily
IPR044795 - Pentatricopeptide repeat-containing protein THA8L-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653270.1 hypothetical protein Csa_023162 [Cucumis sativus]7.3e-13899.19Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDS RPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDP
        DMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDP
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDP

TYJ97367.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]5.4e-13395.95Show/hide
Query:  SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDM
        SKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM
Subjt:  SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDM

Query:  VAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDP
        +AVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSP+P
Subjt:  VAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDP

Query:  PDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        PDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
Subjt:  PDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

XP_004145279.2 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus]7.3e-13899.19Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDS RPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDP
        DMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDP
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDP

XP_008457435.1 PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Cucumis melo]4.3e-13896.08Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        DMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

XP_038895593.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida]3.0e-13693.73Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLP+FASVFL+GLTRRPIRD  LPVKSTIT FQPDSSRP+WGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK EKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
         RLLKLDM++VLGELERQEEVALAVKIFRLI+KQDWYKPDV+IYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMN+YE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        DMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHV+DPPEEIF LR
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

TrEMBL top hitse value%identityAlignment
A0A0A0LVE9 Uncharacterized protein6.2e-14399.22Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDS RPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        DMKKSPDPPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

A0A1S3C5H5 pentatricopeptide repeat-containing protein At3g468702.1e-13896.08Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        DMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

A0A5A7SRJ7 Pentatricopeptide repeat-containing protein2.1e-13896.08Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIRWFSRSKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDM+AVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        DMKKSP+PPDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

A0A5D3BE11 Pentatricopeptide repeat-containing protein2.6e-13395.95Show/hide
Query:  SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDM
        SKLP+FA VFL+GLTRRPIRDVPLPV STIT FQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK  KFMKSHVSRLLKLDM
Subjt:  SKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDM

Query:  VAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDP
        +AVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSP+P
Subjt:  VAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDP

Query:  PDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        PDELPFRIL+KGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
Subjt:  PDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

A0A6J1E045 pentatricopeptide repeat-containing protein At3g468702.7e-13090.2Show/hide
Query:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV
        MAIR FSRSKLP+FASVFL+GLTRRPIRD+PLPVKS IT FQPDSSRPI GFR YHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEK +KFMKSHV
Subjt:  MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHV

Query:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE
        SRLLKLDM++VLGELERQEEVALAVKIFRLI+KQDWYKPDV++YKDLIIALA SKKMDDAM+LWESMR+E+LFPDSQTYTEVIRGFLRYGSPSDAMN+YE
Subjt:  SRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYE

Query:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR
        DMKKSPDPPDELPFRIL+KGLLPHPLLRN+VKQDFEELFPDQ+V+DPPEEIF LR
Subjt:  DMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR

SwissProt top hitse value%identityAlignment
Q1PFH7 Pentatricopeptide repeat-containing protein At1g623501.8e-4645.3Show/hide
Query:  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREE
        + KE L   + LKR +    + ++F+ SHVSRLLK D+V+VL E +RQ +V L +K++ ++R++ WY+PD++ Y+D+++ LAR+KK+D+  K+WE +++E
Subjt:  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREE

Query:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEI
         +  D  T+ +++RGFL    P +AM +Y +M++SPD P  LPFR+++KGL+P+P LR +VK DF ELFP   V+DPPE+I
Subjt:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEI

Q9FKC3 Pentatricopeptide repeat-containing protein At5g48730, chloroplastic3.9e-0929.11Show/hide
Query:  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWE
        ++ K   ++A+ +I   +  K   EK     K    +LL   ++  L E         A+++F L+R+Q WYKP+V IY  LI+ L + K+ + A +L++
Subjt:  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWE

Query:  SMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILMKGLL
         M  E    + + YT ++  + R G    A  + E MK S +  PD   + IL+K  L
Subjt:  SMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILMKGLL

Q9FMQ1 Pentatricopeptide repeat-containing protein At5g12100, mitochondrial5.1e-0930.77Show/hide
Query:  EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMK
        +V   +++F  + K D   P V+IY  LI  L + K+M+DA +L++ M    L P   TY  +I G+ + G+P  +  V E MK     P  + F  L+K
Subjt:  EVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMK

Query:  GLLPHPLLRN--RVKQDFEEL--FPDQHVF
        GL    ++ +   V ++ ++L   PD   F
Subjt:  GLLPHPLLRN--RVKQDFEEL--FPDQHVF

Q9LUR2 Putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial4.3e-0831.63Show/hide
Query:  AVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGL
        A ++F L+ +   Y P+  IY  LI    +SK+++D MK++  M ++ +  ++ TYT +I+G+   G P  A  V+  M     PPD   + +L+ GL
Subjt:  AVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGL

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic4.2e-9667.98Show/hide
Query:  AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSSRPIWGF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSH
        AIR  SR K P FAS+F Q +TR P I  +        T   P   +P   F   +HDGRPRGPLWR +K IGKEALFVI GLKR KED+EK +KF+K+H
Subjt:  AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSSRPIWGF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSH

Query:  VSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY
        V RLLKLDM+AV+GELERQEE ALA+K+F +I+KQ+WY+PDV++YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTYTEVIRGFLR G P+DAMNVY
Subjt:  VSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY

Query:  EDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIF
        EDM KSPDPP+ELPFR+L+KGLLPHPLLRN+VK+DFEELFP++H +DPPEEIF
Subjt:  EDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIF

Arabidopsis top hitse value%identityAlignment
AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-4745.3Show/hide
Query:  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREE
        + KE L   + LKR +    + ++F+ SHVSRLLK D+V+VL E +RQ +V L +K++ ++R++ WY+PD++ Y+D+++ LAR+KK+D+  K+WE +++E
Subjt:  IGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREE

Query:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEI
         +  D  T+ +++RGFL    P +AM +Y +M++SPD P  LPFR+++KGL+P+P LR +VK DF ELFP   V+DPPE+I
Subjt:  NLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEI

AT1G77340.1 Pentatricopeptide repeat (PPR) superfamily protein3.6e-1032.04Show/hide
Query:  RQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRI
        R++EV  A K+F+ + +   ++ +V  Y  LI  L  +KK+D+A+ L   M+++N  P+ +TYT +I      G  S+AMN+++ M +S   PD+  + +
Subjt:  RQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRI

Query:  LMK
        L++
Subjt:  LMK

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-9767.98Show/hide
Query:  AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSSRPIWGF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSH
        AIR  SR K P FAS+F Q +TR P I  +        T   P   +P   F   +HDGRPRGPLWR +K IGKEALFVI GLKR KED+EK +KF+K+H
Subjt:  AIRWFSRSKLPVFASVFLQGLTRRP-IRDVPLPVKSTITDFQPDSSRPIWGF-RLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSH

Query:  VSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY
        V RLLKLDM+AV+GELERQEE ALA+K+F +I+KQ+WY+PDV++YKDLI++LA+SK+MD+AM LWE M++ENLFPDSQTYTEVIRGFLR G P+DAMNVY
Subjt:  VSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVY

Query:  EDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIF
        EDM KSPDPP+ELPFR+L+KGLLPHPLLRN+VK+DFEELFP++H +DPPEEIF
Subjt:  EDMKKSPDPPDELPFRILMKGLLPHPLLRNRVKQDFEELFPDQHVFDPPEEIF

AT5G09320.1 Vacuolar sorting protein 9 (VPS9) domain3.0e-1732.55Show/hide
Query:  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYK
        R PL R R  +  EA+  +Q LKR                       ++ + S   RLLK DMVAVL EL RQ E +LA+K+F  IRK+ WYKP V +Y 
Subjt:  RGPLWRSRKAIGKEALFVIQGLKR---------------FKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYK

Query:  DLIIALARSKKMDDAMKLWESMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPL--LRNRVKQDFEELFPDQ
        D+I  +A +  M++   L+ +M+ E+ L  + + +  ++   L +      M+ Y  M+     PD   FR+L+ GL  +    L   V+QD  E + + 
Subjt:  DLIIALARSKKMDDAMKLWESMR-EENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKGLLPHPL--LRNRVKQDFEELFPDQ

Query:  HVF-DPPEEIFS
          F +  EEI S
Subjt:  HVF-DPPEEIFS

AT5G48730.1 Pentatricopeptide repeat (PPR) superfamily protein2.8e-1029.11Show/hide
Query:  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWE
        ++ K   ++A+ +I   +  K   EK     K    +LL   ++  L E         A+++F L+R+Q WYKP+V IY  LI+ L + K+ + A +L++
Subjt:  RSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWE

Query:  SMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILMKGLL
         M  E    + + YT ++  + R G    A  + E MK S +  PD   + IL+K  L
Subjt:  SMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPD-PPDELPFRILMKGLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTTCGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGAC
GATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTCCGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAG
AAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGAAGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCT
GTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCAAGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTT
GATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAATTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCA
GAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATATGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGT
CTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTGAGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGA
mRNA sequenceShow/hide mRNA sequence
TATATTTAAAGAAATTGGATTTTAAAATGGGAAATCTGTAGGGATGATCTAAACCAAATGATTAGAATTTAAAAAAATAGAATAATGTTTTGTTGACCTAAGTTTGAGTG
AAACTATCAAAATAAAGTTTCCTAGGAGGAAAGGTGTGTGTTGTTGGGAGTGAATATCCATGATTGAACACAAGATCACTAAAGAATGGAATGAGAGAGGGTTGTTGATT
TTGGATCATATAAGAAGAGAAACTTTGATTTCAATCAAGTTGGAGTTGGAGAAGAAGAGAGAAAGAACGAACAAATTTATAACTTCACCTCAAACTAAGAACAATTGTCA
TTTCCGCCCCTGAAATAGATTTTTTAAAAAAATAGAAAGAAAAAGGAAAAGCCTTCCTCTCCTCCTTCTCACGCCTATCTTCCTTCTCCTCCTACAACTCATTGCCTCCG
CCGCCGTCACATCCAACTCTCTCCACCGTTTTGTTTGCCCCTTTTCCTTTCTCTCCCTATATCTCTCTCCGCTGCAGGCGCACGCCGGAAACATCCCATTTCATCTCTCT
CTGCTTCAACTGCTCCGGCACTCGCGACTGCCCAGTCTTTTTCTACTCGTCGCTCACTACCCTACGCATTCTTCCGCCAAAGACGAAAACCACACTCTATCTTCCGCTTC
GGTCGCTCAGTTCGCAGGGATAAGTCGTTGCCCATCTTCATTTTCTTTCTGAGTCACCAATTTGTTAACAGGATACTATCTGGTTCTGATGCCTCTCATAAGTTACAAAA
CCCTCTCTGCTCTCTTCCTGAAGAATCGTCTTATTCCACTGTGATTTGGGGTGGCAATAATCAGATGGCGATTCGGTGGTTTTCCAGGTCGAAATTGCCCGTTTTTGCTT
CGGTATTCCTACAGGGTTTAACGAGGAGACCAATTAGAGATGTCCCATTACCAGTTAAATCGACGATCACTGACTTTCAGCCGGATTCCAGCCGACCCATCTGGGGATTC
CGGCTATATCACGACGGGAGGCCTCGGGGACCCCTTTGGAGAAGCCGGAAAGCAATTGGTAAAGAAGCACTTTTCGTTATTCAAGGATTGAAGAGATTCAAGGAAGATGA
AGAGAAATTCGAAAAGTTCATGAAGAGTCATGTTTCAAGGCTCTTGAAATTGGATATGGTTGCTGTGCTTGGTGAACTCGAGCGGCAGGAGGAGGTTGCTTTAGCTGTCA
AGATATTTAGGTTGATTCGGAAGCAAGACTGGTACAAGCCTGATGTTTATATATATAAAGACTTGATTATTGCATTAGCTAGAAGTAAAAAGATGGATGACGCAATGAAA
TTATGGGAAAGCATGAGAGAGGAAAATTTATTCCCTGACTCTCAAACGTATACTGAAGTCATCAGAGGTTTCTTGAGATATGGATCTCCTTCTGATGCAATGAACGTATA
TGAGGATATGAAGAAGTCTCCAGATCCACCAGACGAGTTGCCATTTAGAATTTTGATGAAAGGTCTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGACTTTG
AGGAGCTCTTTCCTGACCAGCATGTGTTCGATCCCCCAGAAGAGATATTCAGCCTACGTTGATTGAACTAACACGACGGTTTGTCAACGAACATTATTCCGGTTTCTTGA
TCTTTTCCCTGCTGAAGCTGAAAACAACTAAGTGTGTGAAGCTTGACGATAAGAAACTGCAAGGAGATGGAACTGTTATTGATGACATTTCTCTGGACCCGCATCAACTT
GGGATGCAAAGAAGAAGCGAAGGAGATGGTGAAAATACCAAAACTTGAATCAAATGTAGGTGTTCATTTCTGTTTTTAGAGAGTGCAGTTTGTTGAGGGATCATTGCCCA
GAAAATTTCTATTCAACTGACGAATCTGAATGCTACAAAGAAACTTATCCTTCCAGCTTTTTAAAATCTTAATTTTACTCTTTTTCAAGTTTATTAAATTAAACCCTTGT
GTTAATTTTAATGCAAGTCATAAAGTTCAAAGGC
Protein sequenceShow/hide protein sequence
MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSSRPIWGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVA
VLGELERQEEVALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYTEVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILMKG
LLPHPLLRNRVKQDFEELFPDQHVFDPPEEIFSLR