; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G24370 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G24370
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionStructure-specific endonuclease subunit SLX1 homolog
Genome locationChr1:19679405..19682465
RNA-Seq ExpressionCSPI01G24370
SyntenyCSPI01G24370
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0051569 - regulation of histone H3-K4 methylation (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016593 - Cdc73/Paf1 complex (cellular component)
GO:0033557 - Slx1-Slx4 complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0008821 - crossover junction endodeoxyribonuclease activity (molecular function)
GO:0017108 - 5'-flap endonuclease activity (molecular function)
InterPro domainsIPR000305 - GIY-YIG endonuclease
IPR027520 - Structure-specific endonuclease subunit Slx1
IPR035901 - GIY-YIG endonuclease superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060004.1 Structure-specific endonuclease subunit SLX1 [Cucumis melo var. makuwa]1.6e-20893.72Show/hide
Query:  DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAV
        DEEKE DDEEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAV
Subjt:  DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAV

Query:  RSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYG
        RSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKF+KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQ +LENE DWEY+RE EEIC F+VYG
Subjt:  RSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYG

Query:  SMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQL
        SMKEVSNEVPQKLMDYQTGTDGRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQSC VAGTSRTEI+IDD EENQ 
Subjt:  SMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQL

Query:  EGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        EGS MNLQ+QPGR+NLTSGIASEISKVSR +NG VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  EGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

KGN66284.2 hypothetical protein Csa_023148 [Cucumis sativus]1.8e-19998.55Show/hide
Query:  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNY
        I  +VNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNY
Subjt:  IGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNY

Query:  FSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETN
        FSTKF+KNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETN
Subjt:  FSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETN

Query:  EQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTV
        EQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQ+QPGRENLTSGIASEISKVSRWNNGWVPTV
Subjt:  EQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTV

Query:  EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  EYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

XP_004153269.1 structure-specific endonuclease subunit SLX1 homolog [Cucumis sativus]1.3e-23199.24Show/hide
Query:  MRKRKEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MRKRKEKPEICKT DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYN
        EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKF+KNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYN
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYN

Query:  REREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR
        REREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR
Subjt:  REREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR

Query:  TEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        TEIVIDDEEENQLEGSSMNLQ+QPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  TEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

XP_008457313.1 PREDICTED: uncharacterized protein LOC103497035 [Cucumis melo]1.9e-21492.77Show/hide
Query:  MRKRKEKPEICKTM-----DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEKPEICKTM     DEEKE DDEEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEICKTM-----DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKF+KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQ +LENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE

Query:  GDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI
         DWEY+RE EEIC F+VYGSMKEVSNEVPQKLMDYQTGTDGRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQSC 
Subjt:  GDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI

Query:  VAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
        VAGTSRTEI+IDD EENQ EGS MNLQ+QPGR+NLTSGIASEISKVSR +NG VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
Subjt:  VAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

Query:  L
        L
Subjt:  L

XP_038894793.1 structure-specific endonuclease subunit SLX1 [Benincasa hispida]3.4e-18783.29Show/hide
Query:  MRKRKEKPEICKTM---DEEKEDD---EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKE+PEI KTM   +EEKEDD   EEEE  NEVNGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEICKTM---DEEKEDD---EEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW  LNITVNYFSTK++KNAAGCPSLP+HMKVQVSPINELPCYSEGDQ +LENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE

Query:  GDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI
         DWEYNRE EEIC FRVYGSMKEVSNEVPQKLMD+Q  TDGR P  L GCDKE E NEQVPPSSC PSYID GMSYDL  CDE LE DERE ASC  SCI
Subjt:  GDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI

Query:  VAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
        V   SRTEI+IDD +E+Q+EG+ MNL++Q  R+NL+SGIASEISKVSR N   +P VEYEVIDVSTPSPDCRT+SHR KR+VTSG+SE+IDLTKSPTFIQ
Subjt:  VAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

Query:  L
        L
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A0A0M0Y6 Structure-specific endonuclease subunit SLX1 homolog6.5e-23299.24Show/hide
Query:  MRKRKEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
        MRKRKEKPEICKT DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQF
Subjt:  MRKRKEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQF

Query:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYN
        EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKF+KNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYN
Subjt:  EWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYN

Query:  REREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR
        REREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR
Subjt:  REREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSR

Query:  TEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        TEIVIDDEEENQLEGSSMNLQ+QPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  TEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

A0A1S3C574 Structure-specific endonuclease subunit SLX1 homolog9.4e-21592.77Show/hide
Query:  MRKRKEKPEICKTM-----DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
        MRKRKEKPEICKTM     DEEKE DDEEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN
Subjt:  MRKRKEKPEICKTM-----DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTN

Query:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE
        VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKF+KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQ +LENE
Subjt:  VSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENE

Query:  GDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI
         DWEY+RE EEIC F+VYGSMKEVSNEVPQKLMDYQTGTDGRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQSC 
Subjt:  GDWEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCI

Query:  VAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
        VAGTSRTEI+IDD EENQ EGS MNLQ+QPGR+NLTSGIASEISKVSR +NG VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ
Subjt:  VAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQ

Query:  L
        L
Subjt:  L

A0A5D3BBR0 Structure-specific endonuclease subunit SLX1 homolog7.7e-20993.72Show/hide
Query:  DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAV
        DEEKE DDEEEERGN VNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAV
Subjt:  DEEKE-DDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAV

Query:  RSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYG
        RSAAATFKSLSGVANKVKLAYTMLTLPAW GLNITVNYFSTKF+KNAAGCPSLPEHMKVQVSPI+ELPCYSEGDQ +LENE DWEY+RE EEIC F+VYG
Subjt:  RSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYG

Query:  SMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQL
        SMKEVSNEVPQKLMDYQTGTDGRPP VLRGCDKELETNEQVPPSSCTPSY+DVGMSYDLCACDEGLENDEREAASCGQSC VAGTSRTEI+IDD EENQ 
Subjt:  SMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQL

Query:  EGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
        EGS MNLQ+QPGR+NLTSGIASEISKVSR +NG VPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL
Subjt:  EGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL

A0A6J1HZQ2 Structure-specific endonuclease subunit SLX1 homolog2.2e-16377.31Show/hide
Query:  MRKRKEKPEICKTM---DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MR+RKEKPEI KTM   +E+KEDDE+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSA
Subjt:  MRKRKEKPEICKTM---DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDW
        LQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAW  LNITVNYFSTK++ NAAGCPSLP HM+VQ+SPI+ELPCYSEGD+ +LENE DW
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDW

Query:  EYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAG
        EYN+E EE+C  +V+G M EV NE+PQ LMDY TGTDGR PH LRG D+EL+ NEQVP SSCTPSYIDVG+SYDL  C      DE+E A C Q C V G
Subjt:  EYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAG

Query:  TSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRV
           TEI+IDD EENQLEGS M LQ+QPGR+   SGIA+EISKVS      +P VEYEVIDVSTPSP CRTSSH+FKRR+
Subjt:  TSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRV

A0A6J1I681 Structure-specific endonuclease subunit SLX1 homolog2.2e-16377.31Show/hide
Query:  MRKRKEKPEICKTM---DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA
        MR+RKEKPEI KTM   +E+KEDDE+EERGNE NGFFSCYLLASACPR+KGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMV CIYGFPTNVSA
Subjt:  MRKRKEKPEICKTM---DEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSA

Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDW
        LQFEWAWQHPNESLAVRSAAATFKSLSG+ANK+KLAYTMLTLPAW  LNITVNYFSTK++ NAAGCPSLP HM+VQ+SPI+ELPCYSEGD+ +LENE DW
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDW

Query:  EYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAG
        EYN+E EE+C  +V+G M EV NE+PQ LMDY TGTDGR PH LRG D+EL+ NEQVP SSCTPSYIDVG+SYDL  C      DE+E A C Q C V G
Subjt:  EYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAG

Query:  TSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRV
           TEI+IDD EENQLEGS M LQ+QPGR+   SGIA+EISKVS      +P VEYEVIDVSTPSP CRTSSH+FKRR+
Subjt:  TSRTEIVIDDEEENQLEGSSMNLQKQPGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRV

SwissProt top hitse value%identityAlignment
A7STV9 Structure-specific endonuclease subunit SLX1 homolog2.4e-2640.94Show/hide
Query:  NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLS-GVAN
        +GF   YLL    P+FKGHTYIG+TVNP RRI+QHNG + + GA++T RK+PW M+L ++GFP ++ ALQFEWAWQ P  S  ++SAA   K     V  
Subjt:  NGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEI-RCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLS-GVAN

Query:  KVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPI
          ++   +L +  W  L + + +   ++          P HM V   P+
Subjt:  KVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPI

Q0IH86 Structure-specific endonuclease subunit slx14.9e-2738.31Show/hide
Query:  EVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA
        EV GF+  YLL    P++KG  YIGFTVNP+RRI+QHN G+ + GAW+T  + PW+MVL ++GFP +++AL+FEWAWQHP+ S  +       K  S   
Subjt:  EVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVA

Query:  NKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELP
          + +   ML +  W  L +T+ +   ++ +        P HM +    +   P
Subjt:  NKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELP

Q32PI0 Structure-specific endonuclease subunit SLX19.9e-2842.07Show/hide
Query:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR +G  Y+GFTVNP RR++QHN G  + GAWRT  + PWEMVL ++GFP+ V+AL+FEWAWQHP  S  +       +  +  A  ++
Subjt:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSP
        +   ML  P W  L +T+ +    F ++   CP  P HM +   P
Subjt:  LAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSP

Q5PQP5 Structure-specific endonuclease subunit SLX15.2e-2940.24Show/hide
Query:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL ++GFP+ V+AL+FEWAWQHP  S  +       +S +     ++
Subjt:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSP------INELPCYSEGDQD
        +   ML +P W  L +TV +    F      CP+ P HM +   P      + + P  SE D +
Subjt:  LAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSP------INELPCYSEGDQD

Q8BX32 Structure-specific endonuclease subunit SLX11.8e-2940.85Show/hide
Query:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK
        FF  YLL    PR +G  Y+GFTVNP RR+RQHN G  + GAWRT  + PW+MVL I+GFP+ V+AL+FEWAWQHP  S  +       +S +  A  ++
Subjt:  FFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHN-GEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNESLAVRSAAATFKSLSGVANKVK

Query:  LAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSP------INELPCYSEGDQD
        +   ML +P W  L +T+ +    F      CP+ P HM +   P      + + P  SE D +
Subjt:  LAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSP------INELPCYSEGDQD

Arabidopsis top hitse value%identityAlignment
AT2G30350.1 Excinuclease ABC, C subunit, N-terminal1.5e-3436.94Show/hide
Query:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQDMLENEGD
        LQFEWAWQHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW  LN+TVNYFS+K+  +    PSLP HMKVQV  + +L  +++  D    E+E  
Subjt:  LQFEWAWQHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQDMLENEGD

Query:  WEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGR-------PPHVLRGCDK--------ELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLEN
         E N E ++           + S+ + Q      + +D R       P  V    D+         L+  E V       S+I VG         E + N
Subjt:  WEYNREREEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGR-------PPHVLRGCDK--------ELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLEN

Query:  DEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQ-PGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGK
        D   + +C            EIV +DE  +   GS+  ++K+   R N  +   +E              V+ EVID+ TPSP CR  S   +RRV    
Subjt:  DEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQ-PGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGK

Query:  SEMIDLTKSPTFIQ
        SE IDLT SP FI+
Subjt:  SEMIDLTKSPTFIQ

AT2G30350.2 Excinuclease ABC, C subunit, N-terminal2.5e-7143.98Show/hide
Query:  KEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAW
        +EK    K +D   ED      G +  GFF+CYLL S  PR KG TYIGFTVNP+RRIRQHNGEI  GAWRTK+KRPWEMVLCIYGFPTNVSALQFEWAW
Subjt:  KEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAW

Query:  QHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQDMLENEGDWEYNRER
        QHP ES+AVR AAA FKS SGVA+K+KL YTML LPAW  LN+TVNYFS+K+  +    PSLP HMKVQV  + +L  +++  D    E+E   E N E 
Subjt:  QHPNESLAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSE-GDQDMLENEGDWEYNRER

Query:  EEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGR-------PPHVLRGCDK--------ELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAAS
        ++           + S+ + Q      + +D R       P  V    D+         L+  E V       S+I VG         E + ND   + +
Subjt:  EEICGFRVYGSMKEVSNEVPQKLMDYQTGTDGR-------PPHVLRGCDK--------ELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAAS

Query:  CGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQ-PGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLT
        C            EIV +DE  +   GS+  ++K+   R N  +   +E              V+ EVID+ TPSP CR  S   +RRV    SE IDLT
Subjt:  CGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQ-PGRENLTSGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLT

Query:  KSPTFIQ
         SP FI+
Subjt:  KSPTFIQ

AT5G43210.1 Excinuclease ABC, C subunit, N-terminal4.0e-0841.67Show/hide
Query:  FSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ
        +S YL+ S     K  TY+G T +  RR++QHNGEIR GA  +   RPW     I GF     A  FE  W+
Subjt:  FSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCATGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAGAGAGGAAACGAAGTGAATGGCTTCTTTTCATGCTA
TCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAGCGCAGAATCAGACAACACAATGGTGAGATTAGATGCGGTGCTT
GGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTCAGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCA
CTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACAATGCTCACACTTCCTGCTTGGCGTGGTTTAAATAT
AACTGTAAACTACTTCTCTACAAAGTTCATAAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGTCCAAGTTTCCCCCATCAATGAGCTTCCATGCTATT
CCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTTTTCGAGTGTATGGTTCAATGAAAGAAGTTTCAAAT
GAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGATAAGGAGCTTGAGACCAATGAACAAGTGCCACCTTC
TTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGATGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCA
TTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGAACTTGCAGAAGCAACCAGGTAGGGAGAATTTAACA
TCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTTATCGATGTGTCTACCCCGTCTCCAGACTGCCGAAC
AAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATTTATTCAATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCATTCTGACGTGTCCATATGCCCTAAGTCCAATTTTTATAATTTAAATTATTATTTCATTGGGAATACAAAAAAAAATAAAAAAATCTCTTGTGTGAATTAGGGCA
AAACGGTAAATTCACGAACCCAACTCAATTTTGCTGTAATGAAGTGATTTCAAAATCCAAAAATACCATATTTTTTACCAACGGCCGAATTGTATTTTTGAGTAAAATTT
TCATCTTCTACGGAGGCAGAGAGAGAGAGAGAGAGATGCGGAAGAGGAAAGAGAAACCGGAAATCTGTAAAACCATGGATGAGGAGAAGGAAGACGATGAAGAAGAAGAG
AGAGGAAACGAAGTGAATGGCTTCTTTTCATGCTATCTCTTGGCCTCTGCTTGCCCTCGTTTCAAAGGCCATACCTATATCGGATTCACAGTGAACCCGAAGCGCAGAAT
CAGACAACACAATGGTGAGATTAGATGCGGTGCTTGGCGTACTAAGAGGAAGAGACCTTGGGAGATGGTCTTGTGCATTTATGGCTTCCCTACTAATGTTTCTGCTCTTC
AGTTTGAATGGGCGTGGCAGCATCCTAATGAGTCACTGGCTGTAAGAAGTGCTGCTGCAACTTTCAAGTCTCTCTCTGGAGTTGCTAACAAAGTTAAACTTGCATACACA
ATGCTCACACTTCCTGCTTGGCGTGGTTTAAATATAACTGTAAACTACTTCTCTACAAAGTTCATAAAGAATGCGGCTGGTTGCCCAAGTTTGCCAGAGCATATGAAGGT
CCAAGTTTCCCCCATCAATGAGCTTCCATGCTATTCCGAAGGAGATCAAGATATGCTTGAAAATGAAGGTGACTGGGAGTATAATCGAGAACGTGAAGAAATTTGTGGTT
TTCGAGTGTATGGTTCAATGAAAGAAGTTTCAAATGAAGTTCCTCAAAAGTTAATGGATTATCAGACAGGTACAGATGGAAGACCTCCTCACGTGTTGCGTGGATGTGAT
AAGGAGCTTGAGACCAATGAACAAGTGCCACCTTCTTCATGTACTCCGTCTTATATTGATGTGGGTATGTCTTATGACTTGTGTGCATGTGATGAAGGACTCGAGAATGA
TGAAAGAGAGGCAGCTTCGTGTGGTCAGTCTTGCATTGTAGCAGGTACATCTAGAACTGAAATTGTCATTGATGACGAAGAGGAAAACCAATTAGAAGGGAGTAGTATGA
ACTTGCAGAAGCAACCAGGTAGGGAGAATTTAACATCAGGAATAGCTTCTGAAATCAGTAAAGTTTCAAGGTGGAACAATGGCTGGGTTCCAACTGTTGAGTATGAGGTT
ATCGATGTGTCTACCCCGTCTCCAGACTGCCGAACAAGTTCGCATAGATTCAAGAGAAGAGTTACTTCCGGTAAGTCTGAGATGATTGACTTGACTAAATCTCCTACATT
TATTCAATTGTAGAAGGATGGATGGATTTGGATTATTGTGCATATAGGAGATATGGAATGAGTTTTCATGAGAAGTTTCATTTTTGCAATGAAGAGGTAGTATTACTATA
ACAGATAGCATCTTCTCAACCCTTTTCAGAGATAACGTGGGCTCAACTATGGTTGACTAGACCAAATAAGAGGGGAACATGTTGTCAAGTTATATATAATAATTATAATA
ACAGCCTCTCTTGCAAAGGCATCATTTTAAAGGGGAATCTAAGTCTGAAAAATAACATTGAATCGGTTGTGGTATCAATTAATTTGTTTCAAACGACCGGGATCAATGTT
CAACTATGCAACTACACCTTGATTACATATCCATCTATACTACTATATATGGATGGAGTGTAGATGAGAGAATGTTTTTTACTTTTTTCTCTTTGCTCGATTCACATTCC
TTCCTTGTATGTACCTTTCCTGTTTTGACAAGGAATGACAATGGAAGAGAGATTATGAGTTTATAGAGGCATATGAACAGAAATTCAAGCAAGGAGAAAATGAAGGTGAA
TCATCTAAGTGATAGTTGTATCGTTCTTAAAATTTAGAAAGAAAAAAAAAATCTATCACCACCGCTCATATTGATAAACTTAAAAAATTGCGATTCATAATTTATAGTTT
TTCTTTT
Protein sequenceShow/hide protein sequence
MRKRKEKPEICKTMDEEKEDDEEEERGNEVNGFFSCYLLASACPRFKGHTYIGFTVNPKRRIRQHNGEIRCGAWRTKRKRPWEMVLCIYGFPTNVSALQFEWAWQHPNES
LAVRSAAATFKSLSGVANKVKLAYTMLTLPAWRGLNITVNYFSTKFIKNAAGCPSLPEHMKVQVSPINELPCYSEGDQDMLENEGDWEYNREREEICGFRVYGSMKEVSN
EVPQKLMDYQTGTDGRPPHVLRGCDKELETNEQVPPSSCTPSYIDVGMSYDLCACDEGLENDEREAASCGQSCIVAGTSRTEIVIDDEEENQLEGSSMNLQKQPGRENLT
SGIASEISKVSRWNNGWVPTVEYEVIDVSTPSPDCRTSSHRFKRRVTSGKSEMIDLTKSPTFIQL