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CSPI01G24750 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G24750
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationChr1:20168147..20168479
RNA-Seq ExpressionCSPI01G24750
SyntenyCSPI01G24750
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038045.1 uncharacterized protein E6C27_scaffold36G002470 [Cucumis melo var. makuwa]6.5e-3575.7Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        M QK QALRQGNKSV +YY E+DTL+DRLDLDE+M+T+M QF N LNKEI DKVDLQ Y DI+E+LHLAIKVEKQ S++ TRYNS KP SSFNSSWKKEN
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  KREYRSR
        K +YRSR
Subjt:  KREYRSR

XP_022152309.1 uncharacterized protein LOC111020057 [Momordica charantia]7.7e-2869.31Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        MAQKLQALRQGNKSV +YY+EIDTLMDR+DLDE MK LM +F N LNKEIADKVDLQ Y DI+E+LHLAIK+E+Q+  K  RY SSK +S+ +++WKK++
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  K
        K
Subjt:  K

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]2.3e-2464Show/hide
Query:  AQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENK
        AQKLQ LRQG+KSV +YY+E+DTLM+RLDL+E M+ LM +F N LNKEIADKVDLQ Y +I+E+LHLAIK+EKQL  +  RY S+KP+S  +S+WK ++K
Subjt:  AQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENK

XP_023518111.1 beta-galactosidase 15-like [Cucurbita pepo subsp. pepo]1.5e-2665.35Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        MAQKLQ+L+QG+KSV NYY+E+DTLMDRLDLDE M+ LMT+F N LN EIADK DLQ Y DI+E+LH+AIK+E+Q+  +  RY SSK +S F+S+WKK +
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  K
        K
Subjt:  K

XP_038887118.1 uncharacterized protein K02A2.6-like [Benincasa hispida]7.2e-3474.77Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        MAQ+LQALRQGNKSV +YY+E+D LMDRLDLDE M+TLM +F N LNKEIADKVDLQ Y DI+E+LHLAIKVEK LS+KR RY SSKP SS NSSWK EN
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  KREYRSR
        + ++RSR
Subjt:  KREYRSR

TrEMBL top hitse value%identityAlignment
A0A5A7T993 Retrotrans_gag domain-containing protein3.2e-3575.7Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        M QK QALRQGNKSV +YY E+DTL+DRLDLDE+M+T+M QF N LNKEI DKVDLQ Y DI+E+LHLAIKVEKQ S++ TRYNS KP SSFNSSWKKEN
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  KREYRSR
        K +YRSR
Subjt:  KREYRSR

A0A5A7VI33 Reverse transcriptase1.5e-2475.58Show/hide
Query:  IDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENKREYRSR
        +DTLM+RLDLDEKM+TLM + FN LNK+IADKVD  L+ DI+E+LHLAIKV+KQLS++RTRYNSSKP SSF SSWK ENK EYRSR
Subjt:  IDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENKREYRSR

A0A6J1DFN2 uncharacterized protein LOC1110200573.7e-2869.31Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        MAQKLQALRQGNKSV +YY+EIDTLMDR+DLDE MK LM +F N LNKEIADKVDLQ Y DI+E+LHLAIK+E+Q+  K  RY SSK +S+ +++WKK++
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  K
        K
Subjt:  K

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252681.1e-2464Show/hide
Query:  AQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENK
        AQKLQ LRQG+KSV +YY+E+DTLM+RLDL+E M+ LM +F N LNKEIADKVDLQ Y +I+E+LHLAIK+EKQL  +  RY S+KP+S  +S+WK ++K
Subjt:  AQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENK

A0A6J1EVV9 uncharacterized protein LOC1114364637.3e-2459.26Show/hide
Query:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN
        MAQKLQAL+QG KSV +YY+E+DTLMDRL+LDE M+ LM +F N LN EIADK DLQ Y +I+E+LH+AIK+E+Q+  +  RY SSK + +  S+WKKE+
Subjt:  MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKEN

Query:  KR-EYRSR
        K  +Y+ R
Subjt:  KR-EYRSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCACAAAAGCTTCAAGCTTTGAGGCAAGGTAATAAGTCGGTGGGAAACTACTACGAAGAGATAGACACTTTGATGGATCGACTTGATCTTGATGAGAAAATGAAGAC
TCTCATGACACAGTTTTTTAATCGCCTCAACAAGGAGATTGCTGACAAGGTTGATTTACAGTTGTATTGTGACATAAAGGAGATATTGCATCTTGCCATCAAAGTGGAAA
AACAATTGAGTAGCAAAAGAACAAGGTACAATTCTTCTAAACCTTATTCTTCCTTCAACTCATCATGGAAAAAGGAGAATAAAAGAGAATATAGAAGTAGGATAAGTTTG
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGCACAAAAGCTTCAAGCTTTGAGGCAAGGTAATAAGTCGGTGGGAAACTACTACGAAGAGATAGACACTTTGATGGATCGACTTGATCTTGATGAGAAAATGAAGAC
TCTCATGACACAGTTTTTTAATCGCCTCAACAAGGAGATTGCTGACAAGGTTGATTTACAGTTGTATTGTGACATAAAGGAGATATTGCATCTTGCCATCAAAGTGGAAA
AACAATTGAGTAGCAAAAGAACAAGGTACAATTCTTCTAAACCTTATTCTTCCTTCAACTCATCATGGAAAAAGGAGAATAAAAGAGAATATAGAAGTAGGATAAGTTTG
TGA
Protein sequenceShow/hide protein sequence
MAQKLQALRQGNKSVGNYYEEIDTLMDRLDLDEKMKTLMTQFFNRLNKEIADKVDLQLYCDIKEILHLAIKVEKQLSSKRTRYNSSKPYSSFNSSWKKENKREYRSRISL