CuGenDBv2

Gene ID	CSPI01G25280
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	primase homolog protein isoform X1
Genome location	Chr1:20745682..20751671
RNA-Seq Expression	CSPI01G25280
Synteny	CSPI01G25280
Gene Ontology terms	GO:0032508 - DNA duplex unwinding (biological process) GO:0003697 - single-stranded DNA binding (molecular function) GO:0043139 - 5'-3' DNA helicase activity (molecular function)
InterPro domains	IPR006171 - TOPRIM domain IPR027032 - Twinkle-like protein IPR034154 - Archaeal primase DnaG/twinkle, TOPRIM domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008445790.1 PREDICTED: primase homolog protein isoform X2 [Cucumis melo]

1.8e-201

90.39

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Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF F+FI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFT
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GRQV IAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDY+DKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVS

Query:  RVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        R+ILATDSDVPGQALAEELARRLGK+RC RV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  RVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

XP_011659247.1 primase homolog protein isoform X1 [Cucumis sativus]

9.1e-225

98.97

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQF+FINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDY+DKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR

Query:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        VILATDSDVPGQALAEELARRLGKNRC RV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

XP_016899150.1 PREDICTED: primase homolog protein isoform X1 [Cucumis melo]

4.5e-200

90.16

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF F+FI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GR QV IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDY+DKV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV

Query:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        SR+ILATDSDVPGQALAEELARRLGK+RC RV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

XP_031736130.1 primase homolog protein isoform X2 [Cucumis sativus]

4.7e-197

91.21

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQF+FINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPK    R
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
        L  +  S +    G+  +  C   +  W   IFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDY+DKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR

Query:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        VILATDSDVPGQALAEELARRLGKNRC RV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

XP_031736131.1 primase homolog protein isoform X3 [Cucumis sativus]

9.4e-206

91.99

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQF+FINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDE                           VTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDY+DKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR

Query:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        VILATDSDVPGQALAEELARRLGKNRC RV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LYN4 Toprim domain-containing protein

4.4e-225

98.97

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
        MPINSTFTFNSNFNFQF+FINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGR

Query:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
        LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY
Subjt:  LMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTY

Query:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR
        RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDY+DKVSR
Subjt:  RQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSR

Query:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
        VILATDSDVPGQALAEELARRLGKNRC RV WPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE
Subjt:  VILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

A0A1S3BDI8 primase homolog protein isoform X2

8.9e-202

90.39

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF F+FI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFT
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GRQV IAFT
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFT

Query:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVS
        YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDY+DKVS
Subjt:  YRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVS

Query:  RVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        R+ILATDSDVPGQALAEELARRLGK+RC RV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  RVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

A0A1S4DT27 primase homolog protein isoform X4

1.6e-182

90.8

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF F+FI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GR QV IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDY+DKV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV

Query:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANE
        SR+ILATDSDVPGQALAEELARRLGK+RC RV WPYKDGFNRFKDANE
Subjt:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANE

A0A1S4DT34 primase homolog protein isoform X3

2.1e-187

86.79

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF F+FI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GR QV IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIE                KV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV

Query:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        SR+ILATDSDVPGQALAEELARRLGK+RC RV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

A0A1S4DTX2 primase homolog protein isoform X1

2.2e-200

90.16

Show/hide

Query:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG
        MPINSTFTFNSNFNF F+FI HRS P S SLNNFSISSSPSRF LRFCTTRLSSA+SHAPP PPPVK L E+MDL+GIVCDEHCIPGKYYCLFCPKCKGG
Subjt:  MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRF-LRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGG

Query:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF
        RLMERSLSLHVIPTGDFAMWRCF+FECGWAG+IFADG+LAFNGF K  KMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQ+ GR QV IAF
Subjt:  RLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGR-QVTIAF

Query:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV
        TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAP+KVSTDT+PPIEKD+AYQYLW CKDY+DKV
Subjt:  TYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKV

Query:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH
        SR+ILATDSDVPGQALAEELARRLGK+RC RV WPYKDGFNRFKDANEVLVHLGPDALK AI+DAKFYQLS S  IQKEE LFQEH
Subjt:  SRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEH

SwissProt top hits

e value

%identity

Alignment

B5X582 Twinkle homolog protein, chloroplastic/mitochondrial

1.8e-87

54.67

Show/hide

Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQET
        E+C PG++  L CP C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA      I K+  + + E + LEPLCDE+  YF+ R IS++T
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQET

Query:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI
        LERN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  +P  
Subjt:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI

Query:  EKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL
        +KDT Y++LW+C DY+ K SR+++ATD D PGQA+AEE+ARRLGK RC RV WP K     FKDANEVL+  GP  LK+AI DA+ Y +
Subjt:  EKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL

F4I6E6 Primase homolog protein

9.5e-84

52.13

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Query:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE
        LM ++   GI   ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DGKL + +  GK+ + +   + ES+ LEPLCDE
Subjt:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE

Query:  LISYFSMRMISQETLERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
        +  +F+ R IS +TLERN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP 
Subjt:  LISYFSMRMISQETLERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF
        GAP  VS+  +P   KDTA++Y+W+C DY+ K SR+++ATD D PGQALAEELARRLGK RC  V WP K     FKDANEVL+  GP  LK+AI +A+ 
Subjt:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF

Query:  YQLSS
        Y L S
Subjt:  YQLSS

Arabidopsis top hits

e value

%identity

Alignment

AT1G30660.1 nucleic acid binding;nucleic acid binding

6.7e-85

52.13

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Query:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE
        LM ++   GI   ++C PG   CL CPKC+ G   E+SL+L++ P G  A W C + +CG  G +  DGKL + +  GK+ + +   + ES+ LEPLCDE
Subjt:  LMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKL-AFNGFGKITKMVGRSSKESLVLEPLCDE

Query:  LISYFSMRMISQETLERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG
        +  +F+ R IS +TLERN VMQ     ++ IAFTY Q G+LV CKYR++ K+F QE+ T K LYG+DDI +  E+IIVEGE DKL++EEAGF NC+SVP 
Subjt:  LISYFSMRMISQETLERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPG

Query:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF
        GAP  VS+  +P   KDTA++Y+W+C DY+ K SR+++ATD D PGQALAEELARRLGK RC  V WP K     FKDANEVL+  GP  LK+AI +A+ 
Subjt:  GAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKF

Query:  YQLSS
        Y L S
Subjt:  YQLSS

AT1G30680.1 toprim domain-containing protein

1.3e-88

54.67

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Query:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQET
        E+C PG++  L CP C+GG   E+SLSL + P G  A W CF+ +CG  G + ADG LA      I K+  + + E + LEPLCDE+  YF+ R IS++T
Subjt:  EHCIPGKYYCLFCPKCKGGRLMERSLSLHVIPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQET

Query:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI
        LERN VMQ   G ++ IAFTY Q G+LV CKYR++ K F+QE+ T + LYG+DDI    E+IIVEGE+DKL++EEAGFLNC+SVP GAP KVS+  +P  
Subjt:  LERNVVMQ-LAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQEKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPI

Query:  EKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL
        +KDT Y++LW+C DY+ K SR+++ATD D PGQA+AEE+ARRLGK RC RV WP K     FKDANEVL+  GP  LK+AI DA+ Y +
Subjt:  EKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRVYWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCAATAAACTCAACTTTCACTTTCAATTCTAATTTCAACTTCCAATTCAGATTCATTAATCATCGCTCTTTCCCTTTCTCTCATTCTCTAAACAATTTCTCCATTTC
CTCTTCCCCTTCCCGATTCCTTCGGTTCTGCACTACCAGACTATCTTCCGCCGTTTCTCATGCTCCCCCCTCCCCGCCCCCAGTGAAGCATCTTATGGAGAGGATGGATC
TTGTTGGAATAGTCTGTGATGAACATTGTATCCCTGGAAAATACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTG
ATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCAGTTTGAGTGTGGTTGGGCAGGGCAGATATTTGCAGATGGCAAATTGGCATTTAATGGATTCGGCAAAATTAC
AAAAATGGTTGGACGGAGTTCCAAGGAAAGTTTGGTTTTGGAGCCTCTTTGTGATGAGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGA
ATGTTGTTATGCAATTAGCTGGTCGTCAGGTTACTATTGCATTTACTTATCGACAAAATGGACAGCTTGTTGGTTGCAAGTACCGAACCATGGACAAGAGATTTTGGCAG
GAGAAGGGTACAGCAAAGTTCCTGTATGGGATTGATGACATTAATGATGCAGATGAACTCATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTT
CCTGAATTGTATTAGTGTTCCTGGTGGTGCCCCAAACAAGGTTTCAACTGATACAGTTCCACCCATTGAAAAGGATACTGCATACCAATATTTGTGGAGCTGCAAAGACT
ACGTAGATAAGGTTTCCCGCGTTATCTTGGCCACTGATAGCGATGTACCGGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAAAATAGATGTTCGCGAGTA
TATTGGCCATATAAAGATGGCTTCAACCGTTTTAAGGATGCCAATGAGGTTCTAGTGCACTTGGGACCAGATGCTTTGAAGAAAGCAATTGAAGATGCCAAGTTTTACCA
ACTCTCAAGTTCAAATCAAATACAAAAAGAAGAGGACCTTTTCCAAGAGCATCGAGTGGAGTAA

mRNA sequence

Show/hide mRNA sequence

AGAAAACTTTGTGTGTGTATGCGAAGCAGATAAGGCTGCTTCCACTCTGCTCTTCCATTTCTCTCCAAATGCCAATAAACTCAACTTTCACTTTCAATTCTAATTTCAAC
TTCCAATTCAGATTCATTAATCATCGCTCTTTCCCTTTCTCTCATTCTCTAAACAATTTCTCCATTTCCTCTTCCCCTTCCCGATTCCTTCGGTTCTGCACTACCAGACT
ATCTTCCGCCGTTTCTCATGCTCCCCCCTCCCCGCCCCCAGTGAAGCATCTTATGGAGAGGATGGATCTTGTTGGAATAGTCTGTGATGAACATTGTATCCCTGGAAAAT
ACTATTGCCTCTTCTGTCCCAAGTGCAAGGGTGGTCGTTTAATGGAGAGGAGCTTATCTCTTCATGTGATTCCAACTGGAGATTTTGCAATGTGGAGGTGTTTCCAGTTT
GAGTGTGGTTGGGCAGGGCAGATATTTGCAGATGGCAAATTGGCATTTAATGGATTCGGCAAAATTACAAAAATGGTTGGACGGAGTTCCAAGGAAAGTTTGGTTTTGGA
GCCTCTTTGTGATGAGCTAATCTCTTATTTCAGCATGAGAATGATATCCCAAGAAACCTTAGAACGGAATGTTGTTATGCAATTAGCTGGTCGTCAGGTTACTATTGCAT
TTACTTATCGACAAAATGGACAGCTTGTTGGTTGCAAGTACCGAACCATGGACAAGAGATTTTGGCAGGAGAAGGGTACAGCAAAGTTCCTGTATGGGATTGATGACATT
AATGATGCAGATGAACTCATCATTGTTGAAGGTGAAATGGATAAACTTTCAGTTGAAGAAGCTGGTTTCCTGAATTGTATTAGTGTTCCTGGTGGTGCCCCAAACAAGGT
TTCAACTGATACAGTTCCACCCATTGAAAAGGATACTGCATACCAATATTTGTGGAGCTGCAAAGACTACGTAGATAAGGTTTCCCGCGTTATCTTGGCCACTGATAGCG
ATGTACCGGGGCAAGCTTTGGCAGAAGAGCTAGCACGTCGTCTTGGAAAAAATAGATGTTCGCGAGTATATTGGCCATATAAAGATGGCTTCAACCGTTTTAAGGATGCC
AATGAGGTTCTAGTGCACTTGGGACCAGATGCTTTGAAGAAAGCAATTGAAGATGCCAAGTTTTACCAACTCTCAAGTTCAAATCAAATACAAAAAGAAGAGGACCTTTT
CCAAGAGCATCGAGTGGAGTAATCCATAATAGTTAGGTTTTTAGTAGTTGCACTAGAGAGATATTGTGTGTTAATTCTTTGATAGGTAAGAAGCCTTGGATTAAATATTA
AGGAAAAAAG

Protein sequence

Show/hide protein sequence

MPINSTFTFNSNFNFQFRFINHRSFPFSHSLNNFSISSSPSRFLRFCTTRLSSAVSHAPPSPPPVKHLMERMDLVGIVCDEHCIPGKYYCLFCPKCKGGRLMERSLSLHV
IPTGDFAMWRCFQFECGWAGQIFADGKLAFNGFGKITKMVGRSSKESLVLEPLCDELISYFSMRMISQETLERNVVMQLAGRQVTIAFTYRQNGQLVGCKYRTMDKRFWQ
EKGTAKFLYGIDDINDADELIIVEGEMDKLSVEEAGFLNCISVPGGAPNKVSTDTVPPIEKDTAYQYLWSCKDYVDKVSRVILATDSDVPGQALAEELARRLGKNRCSRV
YWPYKDGFNRFKDANEVLVHLGPDALKKAIEDAKFYQLSSSNQIQKEEDLFQEHRVE

CSPI01G25280 (gene) of Cucumber (PI 183967) v1 genome