CuGenDBv2

Gene ID	CSPI01G26020
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L39
Genome location	Chr1:21383208..21384624
RNA-Seq Expression	CSPI01G26020
Synteny	CSPI01G26020
Gene Ontology terms	GO:0005975 - carbohydrate metabolic process (biological process) GO:0006412 - translation (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0008061 - chitin binding (molecular function) GO:0016787 - hydrolase activity (molecular function)
InterPro domains	IPR000077 - Ribosomal protein L39e IPR020083 - Ribosomal protein L39e, conserved site IPR023626 - Ribosomal protein L39e domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

EXB38641.1 60S ribosomal protein L39 [Morus notabilis]

4.9e-21

100

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Query:  SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

KAA0050937.1 60S ribosomal protein L39 [Cucumis melo var. makuwa]

8.3e-21

96.23

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Query:  LSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

OWM65802.1 hypothetical protein CDL15_Pgr015227 [Punica granatum]

4.9e-21

94.44

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Query:  LLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L+ QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

PKI64675.1 hypothetical protein CRG98_014891 [Punica granatum]

8.3e-21

74.32

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Query:  PKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        P  +IYC  P +       +   QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

RCV08756.1 hypothetical protein SETIT_1G351900v2, partial [Setaria italica]

1.4e-20

89.47

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Query:  FFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F +L +QPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  FFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

TrEMBL top hits

e value

%identity

Alignment

A0A218W104 Uncharacterized protein

2.4e-21

94.44

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Query:  LLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L+ QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A2I0K803 Uncharacterized protein

4.0e-21

74.32

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Query:  PKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        P  +IYC  P +       +   QPSHKTFRIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A368PSI7 Uncharacterized protein (Fragment)

6.9e-21

89.47

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Query:  FFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        F +L +QPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  FFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

A0A5A7U961 60S ribosomal protein L39

4.0e-21

96.23

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Query:  LSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        + QPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  LSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

W9R5P2 60S ribosomal protein L39

2.4e-21

100

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Query:  SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  SQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

SwissProt top hits

e value

%identity

Alignment

P51424 60S ribosomal protein L39-1

3.0e-21

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51425 60S ribosomal protein L39

6.0e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

P51426 60S ribosomal protein L39-2

6.0e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q5SMI4 60S ribosomal protein L39-3

1.7e-21

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Q6KAJ8 60S ribosomal protein L39-1

6.0e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Arabidopsis top hits

e value

%identity

Alignment

AT2G25210.1 Ribosomal protein L39 family protein

6.3e-19

97.67

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Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT3G02190.1 Ribosomal protein L39 family protein

6.8e-21

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

AT4G31985.1 Ribosomal protein L39 family protein

2.1e-22

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Query:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        PSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  PSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences

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CDS sequence

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ATGAATACTCCAAAAACCCTAATCTATTGTTCTTTCCCTGAGCTAACAGAGAACGGCCACTTCTTCACTTTGCTCTCTCAGCCGTCTCACAAGACTTTCAGAATCAAGAA
GAAGTTGGCCAAGAAGATGAGACAAAACAGGCCTATTCCTCACTGGATTCGGTTGAGGACTGACAACACCATCAGGTATAATGCTAAGCGAAGGCACTGGCGCCGCACTA
AGCTTGGATTT

mRNA sequence

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Protein sequence

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MNTPKTLIYCSFPELTENGHFFTLLSQPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

CSPI01G26020 (gene) of Cucumber (PI 183967) v1 genome