; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G26140 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G26140
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationChr1:21475562..21475792
RNA-Seq ExpressionCSPI01G26140
SyntenyCSPI01G26140
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-0648Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
        +W  +G L+    RLY LS+A+N+ ++ELW+P    W++ P RPLNDREI
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-0548.98Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
        +W+ N PL++ + RL+ALS  K   VK+LWNP+ K W+I  +RPL D E
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.5e-0651.02Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
        +W+ N PL++A+ RL+ALS  K   VK+LWNP+ K W+I  +RPL D E
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-0648Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
        +W  +G L+    RLY LS+A+N+ ++ELW+P    W++ P RPLNDREI
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-0550Show/hide
Query:  WSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
        W  N PL++ I RLYALS  +++ VKE+W+     W++KP RPLN+RE
Subjt:  WSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein2.1e-0648Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
        +W  +G L+    RLY LS+A+N+ ++ELW+P    W++ P RPLNDREI
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein3.6e-0651.02Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
        +W+ N PL++A+ RL+ALS  K   VK+LWNP+ K W+I  +RPL D E
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
A0A5A7US62 LINE-1 retrotransposable element ORF2 protein1.1e-0550Show/hide
Query:  WSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
        W  N PL++ I RLYALS  +++ VKE+W+     W++KP RPLN+RE
Subjt:  WSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein2.1e-0648Show/hide
Query:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
        +W  +G L+    RLY LS+A+N+ ++ELW+P    W++ P RPLNDREI
Subjt:  DWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREI
A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein1.1e-0550Show/hide
Query:  WSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
        W  N PL++ I RLYALS  +++ VKE+W+     W++KP RPLN+RE
Subjt:  WSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDRE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTGGAGTACAAATGGTCCTCTAGCCATTGCTATCACGAGATTATACGCTTTATCTCAAGCCAAAAACAGTTTGGTAAAAGAGTTGTGGAATCCAACGGATAAGAA
ATGGGACATAAAGCCGCATAGGCCACTAAATGATAGAGAAATATTGGACTCTGGAATCAGATCTCTTCAAAGCTTCCTTATCCGAATGAAGACAAAGGTATGTGCAAACC
GAATTGGAAGC
mRNA sequenceShow/hide mRNA sequence
ATGGATTGGAGTACAAATGGTCCTCTAGCCATTGCTATCACGAGATTATACGCTTTATCTCAAGCCAAAAACAGTTTGGTAAAAGAGTTGTGGAATCCAACGGATAAGAA
ATGGGACATAAAGCCGCATAGGCCACTAAATGATAGAGAAATATTGGACTCTGGAATCAGATCTCTTCAAAGCTTCCTTATCCGAATGAAGACAAAGGTATGTGCAAACC
GAATTGGAAGC
Protein sequenceShow/hide protein sequence
MDWSTNGPLAIAITRLYALSQAKNSLVKELWNPTDKKWDIKPHRPLNDREILDSGIRSLQSFLIRMKTKVCANRIGS