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CSPI01G26570 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G26570
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear transcription factor Y subunit B-4
Genome locationChr1:21715179..21715550
RNA-Seq ExpressionCSPI01G26570
SyntenyCSPI01G26570
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050890.1 nuclear transcription factor Y subunit B-4 [Cucumis melo var. makuwa]3.2e-4673.94Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+LL +REVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDE---------------KHKSKDNH----GEIGETSSPN
        IKVDE                 + +DNH    GEIGETSSPN
Subjt:  IKVDE---------------KHKSKDNH----GEIGETSSPN

KAE8653368.1 hypothetical protein Csa_006911 [Cucumis sativus]5.5e-59100Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDEKHKSKDNHGEIG
        IKVDEKHKSKDNHGEIG
Subjt:  IKVDEKHKSKDNHGEIG

XP_004135780.1 nuclear transcription factor Y subunit B-4 [Cucumis sativus]1.8e-62100Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDEKHKSKDNHGEIGETSSPN
        IKVDEKHKSKDNHGEIGETSSPN
Subjt:  IKVDEKHKSKDNHGEIGETSSPN

XP_004135781.1 nuclear transcription factor Y subunit B-4 [Cucumis sativus]5.8e-4086.73Show/hide
Query:  EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEK
        E L+LPIANVERIMKKI+P+KGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLNGDDIYWAF SLGLDNYAEASSK+LL FRE ERIK  +K
Subjt:  EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEK

XP_008451142.1 PREDICTED: nuclear transcription factor Y subunit B-4 [Cucumis melo]2.0e-4573.24Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+L  +REVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDE---------------KHKSKDNH----GEIGETSSPN
        IKVDE                 + +DNH    GEIGETSSPN
Subjt:  IKVDE---------------KHKSKDNH----GEIGETSSPN

TrEMBL top hitse value%identityAlignment
A0A0A0LW12 CBFD_NFYB_HMF domain-containing protein8.9e-63100Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDEKHKSKDNHGEIGETSSPN
        IKVDEKHKSKDNHGEIGETSSPN
Subjt:  IKVDEKHKSKDNHGEIGETSSPN

A0A0A0LZ17 CBFD_NFYB_HMF domain-containing protein2.8e-4086.73Show/hide
Query:  EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEK
        E L+LPIANVERIMKKI+P+KGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLNGDDIYWAF SLGLDNYAEASSK+LL FRE ERIK  +K
Subjt:  EFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEK

A0A1S3BRX1 nuclear transcription factor Y subunit B-49.9e-4673.24Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+L  +REVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDE---------------KHKSKDNH----GEIGETSSPN
        IKVDE                 + +DNH    GEIGETSSPN
Subjt:  IKVDE---------------KHKSKDNH----GEIGETSSPN

A0A5A7U6S7 Nuclear transcription factor Y subunit B-41.5e-4673.94Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+LL +REVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDE---------------KHKSKDNH----GEIGETSSPN
        IKVDE                 + +DNH    GEIGETSSPN
Subjt:  IKVDE---------------KHKSKDNH----GEIGETSSPN

A0A5D3CG76 Nuclear transcription factor Y subunit B-49.9e-4673.24Show/hide
Query:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER
        MENH+NGDEFLELPIANVERIMKKIIPQKGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WAF S GLDNYAE  +K+L  +REVER
Subjt:  MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVER

Query:  IKVDE---------------KHKSKDNH----GEIGETSSPN
        IKVDE                 + +DNH    GEIGETSSPN
Subjt:  IKVDE---------------KHKSKDNH----GEIGETSSPN

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-45.3e-2856.48Show/hide
Query:  DEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKH
        DE   LPIANV R+MK+I+P   KISKEAK+ +QECA EFISFVT EA+++C  ENR+T+NGDDI+WA  +LGLDNYA+A  + L  +RE ER + +   
Subjt:  DEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKH

Query:  KSKDNHGE
         S D+  E
Subjt:  KSKDNHGE

O82248 Nuclear transcription factor Y subunit B-52.7e-2452.25Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDN
        LPIANV RIMK I+P   K+SKEAK+ MQEC +EFISFVT EA+ +C  E R+T+NGDDI WA  +LG D+YA    K+L  +R +E  K        ++
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDN

Query:  HGEIGETSSPN
        HG+ G  SSP+
Subjt:  HGEIGETSSPN

P25209 Nuclear transcription factor Y subunit B2.1e-2449.12Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVE-----RIKVDEKH
        LPIAN+ RIMKK IP  GKI+K+AK+ +QEC +EFISF+TSEA+ +CQ E R+T+NGDD+ WA  +LG ++Y E    +L  +RE+E       K  +  
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVE-----RIKVDEKH

Query:  KSKDNHGEIGETSS
          KD  G +G +SS
Subjt:  KSKDNHGEIGETSS

Q9FGJ3 Nuclear transcription factor Y subunit B-23.5e-2452.88Show/hide
Query:  NHHNGDEFLE-------LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNF
        N+ NG   L        LPIANV RIMKK +P   KISK+AK+ MQEC +EFISFVT EA+ +CQ E R+T+NGDD+ WA  +LG ++Y E    +L  F
Subjt:  NHHNGDEFLE-------LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNF

Query:  REVE
        RE+E
Subjt:  REVE

Q9SIT9 Nuclear transcription factor Y subunit B-72.7e-2451.96Show/hide
Query:  NHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIK
        N++N ++   LPIANV RIMKK++P  GKISK+AK+ +QEC +EFISFVT EA+ +CQ E R+T+NGDDI WA  +LG ++Y      +L  +R+ E  K
Subjt:  NHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIK

Query:  VD
        V+
Subjt:  VD

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B43.7e-2956.48Show/hide
Query:  DEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKH
        DE   LPIANV R+MK+I+P   KISKEAK+ +QECA EFISFVT EA+++C  ENR+T+NGDDI+WA  +LGLDNYA+A  + L  +RE ER + +   
Subjt:  DEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKH

Query:  KSKDNHGE
         S D+  E
Subjt:  KSKDNHGE

AT2G13570.1 nuclear factor Y, subunit B71.9e-2551.96Show/hide
Query:  NHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIK
        N++N ++   LPIANV RIMKK++P  GKISK+AK+ +QEC +EFISFVT EA+ +CQ E R+T+NGDDI WA  +LG ++Y      +L  +R+ E  K
Subjt:  NHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIK

Query:  VD
        V+
Subjt:  VD

AT2G47810.1 nuclear factor Y, subunit B51.9e-2552.25Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDN
        LPIANV RIMK I+P   K+SKEAK+ MQEC +EFISFVT EA+ +C  E R+T+NGDDI WA  +LG D+YA    K+L  +R +E  K        ++
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDN

Query:  HGEIGETSSPN
        HG+ G  SSP+
Subjt:  HGEIGETSSPN

AT3G53340.1 nuclear factor Y, subunit B101.6e-2455.17Show/hide
Query:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVE
        LPIAN+ RIMK+ +P  GKI+K+AK+ MQEC +EFISFVTSEA+ +CQ E R+T+NGDD+ WA  +LG ++Y +    +L+ +RE+E
Subjt:  LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVE

AT5G47640.1 nuclear factor Y, subunit B22.5e-2552.88Show/hide
Query:  NHHNGDEFLE-------LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNF
        N+ NG   L        LPIANV RIMKK +P   KISK+AK+ MQEC +EFISFVT EA+ +CQ E R+T+NGDD+ WA  +LG ++Y E    +L  F
Subjt:  NHHNGDEFLE-------LPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNF

Query:  REVE
        RE+E
Subjt:  REVE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACCATCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCAAA
GAAGAAAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGACATTTATT
GGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAAGCTTCTTCCAAGTTCTTGCTTAACTTTAGAGAAGTTGAAAGAATCAAGGTTGATGAAAAACACAAAAGTAAA
GATAACCATGGAGAGATCGGTGAAACCTCTTCACCAAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACCATCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCAAA
GAAGAAAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGACATTTATT
GGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAAGCTTCTTCCAAGTTCTTGCTTAACTTTAGAGAAGTTGAAAGAATCAAGGTTGATGAAAAACACAAAAGTAAA
GATAACCATGGAGAGATCGGTGAAACCTCTTCACCAAATTAG
Protein sequenceShow/hide protein sequence
MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSK
DNHGEIGETSSPN