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CSPI01G26590 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G26590
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationChr1:21720178..21720534
RNA-Seq ExpressionCSPI01G26590
SyntenyCSPI01G26590
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0048046 - apoplast (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0004565 - beta-galactosidase activity (molecular function)
GO:0030246 - carbohydrate binding (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050888.1 beta-galactosidase 15-like [Cucumis melo var. makuwa]6.1e-4787.18Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFISFVTSEAAQ+C NENRRTLNGDDIYWA  SLGLDNYAEASS  LLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEED
        SDKA ITFQ    G ED
Subjt:  SDKAIITFQDQHAGEED

KAE8653368.1 hypothetical protein Csa_006911 [Cucumis sativus]5.0e-5797.46Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKIVPEKGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLNGDDIYWA DSLGLDNYAEASSKYLLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEEDQ
        SDKAIITFQDQHAGEEDQ
Subjt:  SDKAIITFQDQHAGEEDQ

XP_004135781.1 nuclear transcription factor Y subunit B-4 [Cucumis sativus]5.0e-5797.46Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKIVPEKGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLNGDDIYWA DSLGLDNYAEASSKYLLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEEDQ
        SDKAIITFQDQHAGEEDQ
Subjt:  SDKAIITFQDQHAGEEDQ

XP_008451143.1 PREDICTED: beta-galactosidase 15-like [Cucumis melo]6.1e-4787.18Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFISFVTSEAAQ+C NENRRTLNGDDIYWA  SLGLDNYAEASS  LLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEED
        SDKA ITFQ    G ED
Subjt:  SDKAIITFQDQHAGEED

XP_038880507.1 nuclear transcription factor Y subunit B-4-like [Benincasa hispida]5.0e-4176.07Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWE+LQLPIANV RIMKKI+P+K KISKEAK+ MQECA+EFISFV SEAA++C  ENRRTLNGDDI WAL S GLDNYAE S+KYLLKFREAERIK 
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEED
        S+KAI    D   GE+D
Subjt:  SDKAIITFQDQHAGEED

TrEMBL top hitse value%identityAlignment
A0A0A0LW12 CBFD_NFYB_HMF domain-containing protein7.8e-4087.76Show/hide
Query:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKASDK
        E L+LPIANVERIMKKI+P+KGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWA  SLGLDNYAEASSK+LL FRE ERIK  +K
Subjt:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKASDK

A0A0A0LZ17 CBFD_NFYB_HMF domain-containing protein2.4e-5797.46Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKIVPEKGKISKEAKK+MQECANEFI+FVTSEAAQRCQNENRRTLNGDDIYWA DSLGLDNYAEASSKYLLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEEDQ
        SDKAIITFQDQHAGEEDQ
Subjt:  SDKAIITFQDQHAGEEDQ

A0A1S3BQ87 Beta-galactosidase3.0e-4787.18Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFISFVTSEAAQ+C NENRRTLNGDDIYWA  SLGLDNYAEASS  LLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEED
        SDKA ITFQ    G ED
Subjt:  SDKAIITFQDQHAGEED

A0A5A7U6S7 Nuclear transcription factor Y subunit B-41.7e-3480.41Show/hide
Query:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKASD
        E L+LPIANVERIMKKI+P+KGKISKEAKK MQECANEFISFVTSEAAQRC  ENRRTLNGDDI WA  S GLDNYAE  +KYLLK+RE ERIK  +
Subjt:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKASD

A0A5D3CFV4 Beta-galactosidase 15-like3.0e-4787.18Show/hide
Query:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA
        MGENWESLQLPIANVERIMKKI+P+KGKISKEAKK MQECANEFISFVTSEAAQ+C NENRRTLNGDDIYWA  SLGLDNYAEASS  LLKFREAERIKA
Subjt:  MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKA

Query:  SDKAIITFQDQHAGEED
        SDKA ITFQ    G ED
Subjt:  SDKAIITFQDQHAGEED

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-43.9e-2865.22Show/hide
Query:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAER
        E   LPIANV R+MK+I+P   KISKEAK+ +QECA EFISFVT EA+++C  ENR+T+NGDDI+WAL +LGLDNYA+A  ++L K+REAER
Subjt:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAER

P25209 Nuclear transcription factor Y subunit B4.4e-2453.47Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE-----RIKASDKA
        LPIAN+ RIMKK +P  GKI+K+AK+ +QEC +EFISF+TSEA+ +CQ E R+T+NGDD+ WA+ +LG ++Y E    YL K+RE E       K+SD +
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE-----RIKASDKA

Query:  I
        I
Subjt:  I

Q60EQ4 Nuclear transcription factor Y subunit B-35.8e-2457.47Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE
        LPIAN+ RIMKK +P  GKI+K+AK+ +QEC +EFISF+TSEA+ +CQ E R+T+NGDD+ WA+ +LG ++Y E    YL K+RE E
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE

Q9FGJ3 Nuclear transcription factor Y subunit B-27.5e-2459.77Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE
        LPIANV RIMKK +P   KISK+AK+ MQEC +EFISFVT EA+ +CQ E R+T+NGDD+ WA+ +LG ++Y E    YL +FRE E
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE

Q9SIT9 Nuclear transcription factor Y subunit B-79.9e-2456.52Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKAS
        LPIANV RIMKK++P  GKISK+AK+ +QEC +EFISFVT EA+ +CQ E R+T+NGDDI WA+ +LG ++Y      YL K+R+ E  K +
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKAS

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B42.7e-2965.22Show/hide
Query:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAER
        E   LPIANV R+MK+I+P   KISKEAK+ +QECA EFISFVT EA+++C  ENR+T+NGDDI+WAL +LGLDNYA+A  ++L K+REAER
Subjt:  ESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAER

AT2G13570.1 nuclear factor Y, subunit B77.0e-2556.52Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKAS
        LPIANV RIMKK++P  GKISK+AK+ +QEC +EFISFVT EA+ +CQ E R+T+NGDDI WA+ +LG ++Y      YL K+R+ E  K +
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKAS

AT3G53340.1 nuclear factor Y, subunit B102.7e-2456.32Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE
        LPIAN+ RIMK+ +P  GKI+K+AK+ MQEC +EFISFVTSEA+ +CQ E R+T+NGDD+ WA+ +LG ++Y +    YL+++RE E
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE

AT4G14540.1 nuclear factor Y, subunit B31.2e-2455.43Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKAS
        LPIANV RIMKK +P   KISK+AK+ +QEC +EFISF+T EA+ +CQ E R+T+NGDD+ WA+ +LG ++Y E    YL K+RE E  K +
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKAS

AT5G47640.1 nuclear factor Y, subunit B25.4e-2559.77Show/hide
Query:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE
        LPIANV RIMKK +P   KISK+AK+ MQEC +EFISFVT EA+ +CQ E R+T+NGDD+ WA+ +LG ++Y E    YL +FRE E
Subjt:  LPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAAGGGAAAGATTTCAAAAGAAGCCAAGAAGAAAAT
GCAAGAATGTGCGAATGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCACTTG
ATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAAGTTCAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTATTACTTTCCAAGAT
CAACATGCAGGAGAAGAGGATCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAAGGGAAAGATTTCAAAAGAAGCCAAGAAGAAAAT
GCAAGAATGTGCGAATGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCACTTG
ATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAAGTTCAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTATTACTTTCCAAGAT
CAACATGCAGGAGAAGAGGATCAATGA
Protein sequenceShow/hide protein sequence
MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWALDSLGLDNYAEASSKYLLKFREAERIKASDKAIITFQD
QHAGEEDQ