; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G26960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G26960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein CUP-SHAPED COTYLEDON 3-like
Genome locationChr1:21951810..21952495
RNA-Seq ExpressionCSPI01G26960
SyntenyCSPI01G26960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ARA91515.1 NAC domain transcription factor II [Cucumis melo]5.7e-1159.52Show/hide
Query:  DFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP
        D D+AV+NF+SQ Q KSHKV DHIKASQNVQSKKETQLQ+VSSLSK +++    +       SN+   + K LSEVEN  AN P
Subjt:  DFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP

KAE8653385.1 hypothetical protein Csa_007462 [Cucumis sativus]2.7e-4592.59Show/hide
Query:  MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS
        MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVR IDLSSVHPRKDACIKSCGNDDFD+AVRNFSSQRQ KSHKVLDHIKASQNVQSKKETQLQVVS
Subjt:  MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS

Query:  SLSKRRSI
        SL K +++
Subjt:  SLSKRRSI

TYK10207.1 protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo var. makuwa]4.8e-2657.75Show/hide
Query:  SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDA----CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS
        S D D+ +RNF  +R+ K HK  DHVESS++ R ID+SS   RKD     CI SCG+ D D+AVRNFSSQRQ KSHKV DHIKASQNVQSKKETQLQ+VS
Subjt:  SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDA----CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS

Query:  SLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP
        SLSK +++    +       SN+   + K LSEVEN  AN P
Subjt:  SLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP

XP_008450706.1 PREDICTED: protein CUP-SHAPED COTYLEDON 3-like [Cucumis melo]2.0e-0843.27Show/hide
Query:  SQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILS
        ++S+  I  S   P     ++   +DD D+  RNFSSQ Q KSHK LDH+   QNVQSK+ETQ+QVVSSLSK  ++ +  +       SN+  + +   S
Subjt:  SQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILS

Query:  EVEN
        EVEN
Subjt:  EVEN

XP_016900940.1 PREDICTED: uncharacterized protein LOC103492204 [Cucumis melo]5.0e-1561.96Show/hide
Query:  CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP
        CI SCG+ D D+AVRNFS QRQ KSHKV DHIKASQNVQSKKETQLQ+VSSLSK +++    +       SN+   + K LSEVEN  AN P
Subjt:  CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP

TrEMBL top hitse value%identityAlignment
A0A0A0LW42 Uncharacterized protein1.8e-7997.55Show/hide
Query:  MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS
        MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVR IDLSSVHPRKDACIKSCGNDDFD+AVRNFSSQRQ KSHKVLDHIKASQNVQSKKETQLQVVS
Subjt:  MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS

Query:  SLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWPWVSRVKDSVPQVARQVLLHGN
        SL KRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWPWVSRVKDSVPQVARQVLLHGN
Subjt:  SLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWPWVSRVKDSVPQVARQVLLHGN

A0A1S3BQH1 protein CUP-SHAPED COTYLEDON 3-like9.8e-0943.27Show/hide
Query:  SQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILS
        ++S+  I  S   P     ++   +DD D+  RNFSSQ Q KSHK LDH+   QNVQSK+ETQ+QVVSSLSK  ++ +  +       SN+  + +   S
Subjt:  SQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILS

Query:  EVEN
        EVEN
Subjt:  EVEN

A0A1S4DYZ1 uncharacterized protein LOC1034922042.4e-1561.96Show/hide
Query:  CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP
        CI SCG+ D D+AVRNFS QRQ KSHKV DHIKASQNVQSKKETQLQ+VSSLSK +++    +       SN+   + K LSEVEN  AN P
Subjt:  CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP

A0A5D3CE10 Protein CUP-SHAPED COTYLEDON 3-like2.3e-2657.75Show/hide
Query:  SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDA----CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS
        S D D+ +RNF  +R+ K HK  DHVESS++ R ID+SS   RKD     CI SCG+ D D+AVRNFSSQRQ KSHKV DHIKASQNVQSKKETQLQ+VS
Subjt:  SDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDA----CIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVS

Query:  SLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP
        SLSK +++    +       SN+   + K LSEVEN  AN P
Subjt:  SLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP

A0A678NU60 NAC domain transcription factor II2.8e-1159.52Show/hide
Query:  DFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP
        D D+AV+NF+SQ Q KSHKV DHIKASQNVQSKKETQLQ+VSSLSK +++    +       SN+   + K LSEVEN  AN P
Subjt:  DFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFRLKQFQNELKLSNQLQLQIKILSEVENSVANWP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCG
ATGGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAAAGCAGTAAGAAATTTCAGCTCTCAACGTCAATCTA
AATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCCAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTAGCAAGCGTCGTTCAATTTTCAGG
TTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGAAGTTGAGAATAGTGTAGCCAACTGGCCATGGGTCTCGAGGGT
CAAGGATAGTGTTCCTCAAGTCGCAAGACAAGTGCTACTGCATGGAAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGCCGAAAGTGATGACTCTGACAAGCAGCTAAGAAATTTCAGGCCTCGACGTAAACTTAAATACCATAAGGAACGAGACCATGTAGAGTCTTCACAAAGTGTTCG
ATGGATAGATCTTTCCTCTGTCCACCCTCGTAAAGATGCCTGCATAAAATCGTGCGGAAATGATGACTTTGACAAAGCAGTAAGAAATTTCAGCTCTCAACGTCAATCTA
AATCCCATAAGGTTCTAGACCATATCAAAGCTTCACAAAATGTCCAGTCCAAGAAGGAAACTCAACTCCAAGTAGTGTCATCCCTTAGCAAGCGTCGTTCAATTTTCAGG
TTAAAGCAGTTCCAGAACGAATTAAAGTTGTCAAACCAGCTGCAACTTCAAATAAAGATACTAAGTGAAGTTGAGAATAGTGTAGCCAACTGGCCATGGGTCTCGAGGGT
CAAGGATAGTGTTCCTCAAGTCGCAAGACAAGTGCTACTGCATGGAAATTGA
Protein sequenceShow/hide protein sequence
MKAESDDSDKQLRNFRPRRKLKYHKERDHVESSQSVRWIDLSSVHPRKDACIKSCGNDDFDKAVRNFSSQRQSKSHKVLDHIKASQNVQSKKETQLQVVSSLSKRRSIFR
LKQFQNELKLSNQLQLQIKILSEVENSVANWPWVSRVKDSVPQVARQVLLHGN