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CSPI01G28300 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G28300
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description30S ribosomal protein S16
Genome locationChr1:23018560..23021243
RNA-Seq ExpressionCSPI01G28300
SyntenyCSPI01G28300
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008344026.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like isoform X2 [Malus domestica]8.8e-6089.52Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDP+SGRFVTP K    G  G+
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

XP_008450874.1 PREDICTED: 30S ribosomal protein S16 [Cucumis melo]4.5e-6495.97Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDPLSGRFVTP KKPTD SNGE
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

XP_009361624.1 PREDICTED: uncharacterized protein LOC103951876 isoform X1 [Pyrus x bretschneideri]8.8e-6089.52Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDP+SGRFVTP K    G  G+
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

XP_011659994.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus]6.7e-68100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGEADS
        RPVDPLSGRFVTPAKKPTDGSNGEADS
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGEADS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]8.8e-6090Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFR+G+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTD---GSNGEADS
        R VDPLSGRFVTP +KPTD   G +G+ADS
Subjt:  RPVDPLSGRFVTPAKKPTD---GSNGEADS

TrEMBL top hitse value%identityAlignment
A0A0A0LZG2 Uncharacterized protein3.3e-68100Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGEADS
        RPVDPLSGRFVTPAKKPTDGSNGEADS
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGEADS

A0A1S3BQ70 30S ribosomal protein S162.2e-6495.97Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDPLSGRFVTP KKPTD SNGE
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

A0A498KI51 Uncharacterized protein4.3e-6089.52Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRL+RFGCKN+PFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDP+SGRFVTP K    G  G+
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

A0A5D3CDW9 30S ribosomal protein S162.2e-6495.97Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDPLSGRFVTP KKPTD SNGE
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like5.6e-6089.31Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFR+G+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSN----GEADS
        RPVDPLSGRF TP +K TD SN    G+ADS
Subjt:  RPVDPLSGRFVTPAKKPTDGSN----GEADS

SwissProt top hitse value%identityAlignment
A8LMC0 30S ribosomal protein S169.3e-2041.27Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P+D V R+L  + +LP         +  P+  
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGEAD
         P      R    A K  + S   AD
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGEAD

B3PR16 30S ribosomal protein S169.3e-2040.94Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        M ++IRL+R G K +P+Y V+ AD+RSPRDG+ LE LG +NP+  +D  KR+ LN ER+K+WL  GAQP+D V R L  +G      +     K  P   
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGEADS
        +P      R    A+K  D +   AD+
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGEADS

O65686 30S ribosomal protein S16-1, chloroplastic9.6e-3354.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFR+GL+PP PMV +G K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

Q16AN8 30S ribosomal protein S165.4e-2054.88Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWL  GAQP+D V R+L  +GL
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial5.6e-5780.65Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFRSGLLPPPPMVAMGRKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDP++GR+V    K  + ++ +
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 166.8e-3454.46Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFR+GL+PP PMV +G K G + T
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  -RPVDPLSGRFV
         + V P++G  +
Subjt:  -RPVDPLSGRFV

AT5G56940.1 Ribosomal protein S16 family protein4.0e-5880.65Show/hide
Query:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT
        MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFRSGLLPPPPMVAMGRKGG RDT
Subjt:  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDT

Query:  RPVDPLSGRFVTPAKKPTDGSNGE
        RPVDP++GR+V    K  + ++ +
Subjt:  RPVDPLSGRFVTPAKKPTDGSNGE

ATCG00050.1 ribosomal protein S161.4e-0733.33Show/hide
Query:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGL
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     I  ++G+
Subjt:  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTTCGAATTCGATTGTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCT
AGGTTACTATAATCCCTTACCAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCGTGC
AGCGTATTCTTTTTAGATCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTC
GTCACTCCAGCGAAGAAGCCAACTGATGGTTCCAATGGTGAAGCCGATTCATAG
mRNA sequenceShow/hide mRNA sequence
GAAGTGGAGGCGTCACTTCTGTTCTTTACTCCATCCTCATTTCAATTTGCCGAATTTTCAAGATTTTTGTAGGGTTTTACGAGCTCGAAAATGGTGGTTCGAATTCGATT
GTCCAGGTTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTAC
CAGGTCAGGATGGTGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCGTGCAGCGTATTCTTTTTAGATCA
GGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGCGGACGCTTCGTCACTCCAGCGAAGAAGCC
AACTGATGGTTCCAATGGTGAAGCCGATTCATAGAACTTTCAGAAAAATCTCGGGCTCTGGAATCATTCAAATGTGATTTCTAACTCGTCCTGTTGTTCAGGTAAAATAG
TTCAATAAATCGGTCCATTTACCTTTGATTACAAGATGCAGTTTTTGATGGGGAATTAGAAAAAGCCAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTA
GATATTATCAATGTCCAATCCTCCAGTATCAAGGCATAGTAGGGTTGTTGGACTGAGCTTGTCTCACCGAAGATTAGCCATTACGTTGAGAAAACATGATATTGTTGTCT
AATTTAAACATGTTTTGTTCTTCCTTTGTTATGTTATGTTATATTCATTTTGCTTTTCTAGTAGCGAGATTTTGAAAACGCCATCTTTTATCACTTTTTATTCATTTGAT
ACCTATATCCACTCATTTGCTGAGCTGACTTACCCTCGTCTGTTTGAGACAAGGAGCGAAGTTGTAAAGCCTTGAGAGTTGTGAACTCTTAAGTTGCACAATGTAACTAA
TAAGACATGTAATTGATGTGTTTTTAGTCATGGGCCTACAAACTCCTCGTGAAGTTTACAATTTTCCACTCCCCAACTCTTTCATCAGCTGGCGCAAATATTCCTTGTGC
G
Protein sequenceShow/hide protein sequence
MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRF
VTPAKKPTDGSNGEADS