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CSPI01G28540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G28540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPhotosystem II PsbX
Genome locationChr1:23188438..23189626
RNA-Seq ExpressionCSPI01G28540
SyntenyCSPI01G28540
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009523 - photosystem II (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009518 - Photosystem II PsbX


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653441.1 hypothetical protein Csa_007456 [Cucumis sativus]8.6e-52100Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDP
        GVVVVAILGAVIGVANFDP
Subjt:  GVVVVAILGAVIGVANFDP

KAG7023687.1 Mechanosensitive ion channel protein 10, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3979.2Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLP---SFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSI
        MASTSA+S+ALP T+AT K LSN AFFNPLP   S +SRK IA AP SNG ++AVRSS KEKA+ G++AAALTASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLP---SFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSI

Query:  AAGGVVVVAILGAVIGVANFDPVKR
        AAGG VVVAILGAVIGV+NFDPVKR
Subjt:  AAGGVVVVAILGAVIGVANFDPVKR

XP_008450907.1 PREDICTED: uncharacterized protein LOC103492356 [Cucumis melo]1.0e-4992.68Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKAVAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKRS
        G VVVAI GAVIGVANFDPVKRS
Subjt:  GVVVVAILGAVIGVANFDPVKRS

XP_031735956.1 uncharacterized protein LOC116401689 [Cucumis sativus]4.1e-54100Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKRS
        GVVVVAILGAVIGVANFDPVKRS
Subjt:  GVVVVAILGAVIGVANFDPVKRS

XP_038878912.1 uncharacterized protein LOC120071001 [Benincasa hispida]2.2e-4791.06Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSALSMALP T+AT KPLSNDAFFNPLPSFKSRK IA AP SNGRI+AVRSS KEKAVAGI+AAALTASMVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKRS
        G VVVAILGAVIGVANFDPVKRS
Subjt:  GVVVVAILGAVIGVANFDPVKRS

TrEMBL top hitse value%identityAlignment
A0A0A0LWL3 Uncharacterized protein2.0e-54100Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKRS
        GVVVVAILGAVIGVANFDPVKRS
Subjt:  GVVVVAILGAVIGVANFDPVKRS

A0A1S3BRD2 uncharacterized protein LOC1034923565.1e-5092.68Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+SMALPFTHAT KPLSNDAFFNPLPSFKSRKPIA APISNGRI+AVRSS KEKAVAGI+AAAL ASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKRS
        G VVVAI GAVIGVANFDPVKRS
Subjt:  GVVVVAILGAVIGVANFDPVKRS

A0A6J1H8G2 uncharacterized protein LOC1114614522.4e-3978.4Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLP---SFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSI
        MASTS +S+ALP T+AT K LSN AFFNPLP   S +SRK IA AP S+GR++AVRSS KEKA+ G++AAALTASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLP---SFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSI

Query:  AAGGVVVVAILGAVIGVANFDPVKR
        AAGG VVVAILGAVIGV+NFDPVKR
Subjt:  AAGGVVVVAILGAVIGVANFDPVKR

A0A6J1HV97 uncharacterized protein LOC1114677553.5e-3575.41Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MAS  A+SMALP T+A++K LSNDAFFNPLPS +SRK I  AP    R++ V SS KEKAV G++AAAL+A+MVIPEVAEAAG GVSPSLKNFLLSIAAG
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKR
        GVVV+AILGAVIGV+NFDPVKR
Subjt:  GVVVVAILGAVIGVANFDPVKR

A0A6J1J9Y5 uncharacterized protein LOC1114848833.1e-3979.2Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPL---PSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSI
        MASTS +S+ALP T AT K LSN AFFNPL   PS + RK IA AP SNGR++AVRSS KEKA+ G+SAAALTASMVIPEVAEAAG GVSPSLKNFLLSI
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPL---PSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSI

Query:  AAGGVVVVAILGAVIGVANFDPVKR
        AAGG VVVAILGAVIGV+NFDPVKR
Subjt:  AAGGVVVVAILGAVIGVANFDPVKR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G06520.1 photosystem II subunit X3.9e-2656.1Show/hide
Query:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG
        MASTSA+S+  P       P     F  PLP   S+  +AT      + L V++   +KA+ GISAAALTASMVIPE+AEAAGSG+SPSLKNFLLSIA+G
Subjt:  MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAG

Query:  GVVVVAILGAVIGVANFDPVKRS
        G+V+  I+G V+GV+NFDPVKR+
Subjt:  GVVVVAILGAVIGVANFDPVKRS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCACTTCCGCTCTTTCAATGGCCTTACCATTCACCCACGCCACCCGCAAGCCACTCTCCAACGACGCTTTCTTCAACCCATTGCCCTCTTTTAAGTCCCGCAA
GCCCATCGCCACTGCTCCCATCTCCAACGGAAGGATCCTCGCCGTTCGATCTTCCTTCAAGGAGAAGGCTGTTGCTGGAATCTCTGCTGCTGCTCTCACCGCGTCGATGG
TCATTCCAGAGGTTGCCGAGGCTGCCGGATCCGGTGTCTCGCCCTCCTTGAAGAACTTCTTGCTGAGTATTGCGGCAGGTGGAGTGGTGGTGGTGGCGATATTGGGGGCG
GTCATCGGCGTCGCCAACTTTGACCCGGTGAAGCGAAGCTGA
mRNA sequenceShow/hide mRNA sequence
GTTTGCACTTTATTTACAGACTTCCCTTAAACCTCGACTTCCTAAACATGCACTCTTAAACACAGCTTTTTCAATCTCAAGCTACCTAAACCTCCAAACTTAACATTTTT
AGGAATAAGTTTCCAAATTTGCACACCGAACGACGAACCTTTAAGGTGTTCGTTACAACCAATAAACCTCAAAATAAATAATCACTGATATTTTGGAAGGCAACCTATTT
AGAGGGTAGCGAAGGACACAGAATAAGGTGGAGAGTATAGAGGCCCAAAGGAAAGGCCCAAAGGAAAGGCCCAAAAGTATAAGAAGACCGTACCGGAGGATTTGAAAGGC
GATGATGATTGGACCAATAAGATAACCTTATCTACCAATAAAGCATTCAGAAGTTGCCACGTCAGACCAAGATCAAGATTTCAACCTCACCAACAATCCCCAATTCCCTC
CGCTTCTTCTTCACTGGCCCACACCCTTTTCCCAAAAATCCCCTAATCCCCCAATTCTCATCTTCCCAACAATTTTCCACAAAATCCTCCATTCCCCCAACCTCCCAATT
CATCCCATCAATGGCTTCCACTTCCGCTCTTTCAATGGCCTTACCATTCACCCACGCCACCCGCAAGCCACTCTCCAACGACGCTTTCTTCAACCCATTGCCCTCTTTTA
AGTCCCGCAAGCCCATCGCCACTGCTCCCATCTCCAACGGAAGGATCCTCGCCGTTCGATCTTCCTTCAAGGAGAAGGCTGTTGCTGGAATCTCTGCTGCTGCTCTCACC
GCGTCGATGGTCATTCCAGAGGTTGCCGAGGCTGCCGGATCCGGTGTCTCGCCCTCCTTGAAGAACTTCTTGCTGAGTATTGCGGCAGGTGGAGTGGTGGTGGTGGCGAT
ATTGGGGGCGGTCATCGGCGTCGCCAACTTTGACCCGGTGAAGCGAAGCTGAGCGCAAATGTGAAGTAAAAAGGGGGGAAAAAAACGAAGTAAATTGTAATTTTTGTGTT
TTACGTTTATTTAATCGTTGTGTTTGTGGTCATGCTAAATTGCTAATGTATGGATTTTTTAGCTGTAAACTTTTTCCATTCAACTCTAAATTTCTCCATCTCTCTTCATT
TATGCCCAAATGAATCTCTATTCAATCACAACATTTTCAATTATGAATTTGATATTGATGTTTAAATAAAATAAATAAATAAAAAGGAA
Protein sequenceShow/hide protein sequence
MASTSALSMALPFTHATRKPLSNDAFFNPLPSFKSRKPIATAPISNGRILAVRSSFKEKAVAGISAAALTASMVIPEVAEAAGSGVSPSLKNFLLSIAAGGVVVVAILGA
VIGVANFDPVKRS