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CSPI01G28550 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G28550
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein ELF4-LIKE
Genome locationChr1:23198716..23200770
RNA-Seq ExpressionCSPI01G28550
SyntenyCSPI01G28550
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021961.1 Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma]2.0e-5096.46Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+ QIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_004144022.1 protein ELF4-LIKE 4 [Cucumis sativus]7.2e-53100Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

XP_022147541.1 protein ELF4-LIKE 4 [Momordica charantia]7.7e-4792.86Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGS  QID KILQ FQKNFVQVQ+ILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLS +FTRS+EVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNR
        KSDGKAGQKRNR
Subjt:  KSDGKAGQKRNR

XP_022933909.1 protein ELF4-LIKE 4-like [Cucurbita moschata]2.0e-5096.46Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+ QIDSKILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_022961237.1 protein ELF4-LIKE 4-like [Cucurbita moschata]1.4e-5198.25Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

TrEMBL top hitse value%identityAlignment
A0A0A0M235 Elf4 domain-containing protein3.5e-53100Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A1S3BQA6 protein ELF4-LIKE 43.5e-53100Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A5D3CFE9 Protein ELF4-LIKE 4-like isoform X23.5e-53100Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A6J1H9N1 protein ELF4-LIKE 4-like6.6e-5298.25Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A6J1JGF0 protein ELF4-LIKE 4-like6.6e-5298.25Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.0e-1342.17Show/hide
Query:  DSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG

O80877 Protein ELF4-LIKE 17.6e-1339Show/hide
Query:  EGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS
        E D      S+   D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVGLI E+N NI +V+++Y+DLS +F +  +     + +GD++
Subjt:  EGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS

Q570U6 Protein ELF4-LIKE 42.6e-3771.68Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

Q8S8F5 Protein ELF4-LIKE 31.7e-3376.53Show/hide
Query:  MEGDTFSG-LGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGDT S  +GS  Q+D KILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDTFSG-LGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

Q94BS8 Protein ELF4-LIKE 25.4e-3570.18Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD +SG G   Q+D K+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKA-GQKRNRA
        KSDGKA  QKR R+
Subjt:  KSDGKA-GQKRNRA

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 41.8e-3871.68Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

AT1G17455.2 ELF4-like 41.8e-3871.68Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

AT1G72630.1 ELF4-like 23.8e-3670.18Show/hide
Query:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD +SG G   Q+D K+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKA-GQKRNRA
        KSDGKA  QKR R+
Subjt:  KSDGKA-GQKRNRA

AT2G06255.1 ELF4-like 31.2e-3476.53Show/hide
Query:  MEGDTFSG-LGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGDT S  +GS  Q+D KILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDTFSG-LGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

AT2G40080.1 Protein of unknown function (DUF1313)1.4e-1442.17Show/hide
Query:  DSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGTGATACATTTTCGGGGCTTGGGAGTAGTCCACAGATTGATAGCAAGATTTTACAAACATTTCAGAAGAATTTTGTTCAAGTTCAAAACATATTGGATCAAAA
CAAGCTGCTTATTAGTGAGATAAACCAGAATCACGAGTCAAAAATCCCGGACAATCTTAACAGAAATGTGGGTCTGATCAGAGAATTAAACAACAATATCAGGAGGGTTG
TTGACTTATATGCTGATCTTTCATGTTCGTTCACCAGATCCATGGAAGTTTCTTCAGAAGGTGATTCAAGTGGAGCTTTGAAATCAGATGGAAAAGCAGGTCAGAAGAGA
AATAGGGCTGCTTAA
mRNA sequenceShow/hide mRNA sequence
GTATATGTATGAAGAAGGGGTTAGAGCGTGACTGTCAAATCCTATATATTCCTCCCTCTTTCTATTTCTCTCACTTTCCCTCTTTCAGTTTCTCTCTCTAAAATCCTCTC
TCTGTTGTAATTCTCAAGGATTCAGAGGGTAGGGGCCTGTTTGGGAGATTCGATTGAAGCGGCGATCCCTTTTCTTTTTCTTTTTTTCTTTTTTTTTTCTTTCTTTTTAG
ATTTCTGGGTATTTCTTGATTTTGTTTTTCATCCTTTTTTTCCTTTGGGAAATCTCTTCTTTTCTGAGTTATTCTCATTTCAATCCCTGTATGTCTTCTTCTCTCCCAAT
ATAATGTTCCAGATTTTCAAGAGAAGGTTGTGATTTGATAGAATTCTGATCTGTAAAAGAATGGAGGGTGATACATTTTCGGGGCTTGGGAGTAGTCCACAGATTGATAG
CAAGATTTTACAAACATTTCAGAAGAATTTTGTTCAAGTTCAAAACATATTGGATCAAAACAAGCTGCTTATTAGTGAGATAAACCAGAATCACGAGTCAAAAATCCCGG
ACAATCTTAACAGAAATGTGGGTCTGATCAGAGAATTAAACAACAATATCAGGAGGGTTGTTGACTTATATGCTGATCTTTCATGTTCGTTCACCAGATCCATGGAAGTT
TCTTCAGAAGGTGATTCAAGTGGAGCTTTGAAATCAGATGGAAAAGCAGGTCAGAAGAGAAATAGGGCTGCTTAAATCCACAAAAATTCATCTTCTCCATTCTTTGGCAT
GGTGGGAGAGGAGGAGGAGGAGGAAGAACAAACATATTTTCTCATCTCTGTCAAAAACAAAAAGGCTAGTATATCAAATAGATTCTCTGTAACTTTCTTGTATGATTTAA
CTATCTAGTTTTTACTTAGTTCTTGATCATCGTCGTCGTCATTATCGTCATTATCATCCCTCTCCTGCATTGCTTAGAGAAAATAATTGTCCTGATTCTGTATTTAATTG
CTTATCTGCCTAACTGTGGATCTACTTGACAAAATTAAGCATCAAATTCTCATCTGATTTCTGGTCTTGGTTCCAACTTTTATTCCCTG
Protein sequenceShow/hide protein sequence
MEGDTFSGLGSSPQIDSKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKR
NRAA