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CSPI01G29280 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G29280
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionarabinogalactan peptide 13-like
Genome locationChr1:23757894..23758557
RNA-Seq ExpressionCSPI01G29280
SyntenyCSPI01G29280
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
InterPro domainsIPR039281 - Arabinogalactan protein 3/12/13/14/21


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653471.1 hypothetical protein Csa_007150 [Cucumis sativus]1.6e-17100Show/hide
Query:  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
        MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
Subjt:  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPL
KAG7022018.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-0766.67Show/hide
Query:  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
        AA +F+ LMV M+V V+   + SS+IVAAQEAPAPSPASDA LS+PTLMAS  PLV  FF
Subjt:  AAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
KAG7023913.1 Arabinogalactan peptide 14, partial [Cucurbita argyrosperma subsp. argyrosperma]2.0e-0767.8Show/hide
Query:  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
        A +FQ LM+ M+V    A++ SS IVAAQEAPAPSPASDASLS+PTLMAS  PL  GFF
Subjt:  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
XP_011660059.1 arabinogalactan protein 13 [Cucumis sativus]2.4e-21100Show/hide
Query:  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI
        MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI
Subjt:  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI
XP_038879727.1 arabinogalactan protein 13-like [Benincasa hispida]6.2e-0972.88Show/hide
Query:  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
        A + Q LM+ +MVVVL+A SSSS IVAAQEAPAPSPASDA +S+PTLMAS  PLV GFF
Subjt:  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
TrEMBL top hitse value%identityAlignment
A0A0A0LWU9 Uncharacterized protein1.2e-21100Show/hide
Query:  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI
        MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI
Subjt:  MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI
A0A6J1JCI6 arabinogalactan peptide 13-like3.7e-0766.1Show/hide
Query:  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
        A +FQ LM+ M+V    A++ SS IVAAQEAPAPSPASDA LS+PTLMAS  PL  GFF
Subjt:  AKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFF
SwissProt top hitse value%identityAlignment
Q9C8A4 Arabinogalactan protein 218.2e-0447.17Show/hide
Query:  MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        M  M+ ++++A++ S+A  A  EAPAPSP SDA++ +P L AS V L  GF F
Subjt:  MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
Q9LVC0 Arabinogalactan protein 142.8e-0449.15Show/hide
Query:  QGLMVTMMVVVLIAISSSSAI---VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        + + + + VVVL+A+ + S +   VAA +APAPSP SDAS  IPT  AS   + FGFFF
Subjt:  QGLMVTMMVVVLIAISSSSAI---VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
Q9STQ3 Arabinogalactan protein 133.7e-0450Show/hide
Query:  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        + + + + V VL+A  + SA+   AA EAPAPSP SDASL+IP   AS   L FGF F
Subjt:  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
Arabidopsis top hitse value%identityAlignment
AT1G55330.1 arabinogalactan protein 215.8e-0547.17Show/hide
Query:  MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        M  M+ ++++A++ S+A  A  EAPAPSP SDA++ +P L AS V L  GF F
Subjt:  MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
AT3G13520.1 arabinogalactan protein 123.8e-0441.51Show/hide
Query:  MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        ++ +++V ++A S+   + A  EAPAPSP SDA++ +P L AS   L  GF F
Subjt:  MVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
AT4G26320.1 arabinogalactan protein 132.6e-0550Show/hide
Query:  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        + + + + V VL+A  + SA+   AA EAPAPSP SDASL+IP   AS   L FGF F
Subjt:  QGLMVTMMVVVLIAISSSSAI--VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
AT5G56540.1 arabinogalactan protein 142.0e-0549.15Show/hide
Query:  QGLMVTMMVVVLIAISSSSAI---VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF
        + + + + VVVL+A+ + S +   VAA +APAPSP SDAS  IPT  AS   + FGFFF
Subjt:  QGLMVTMMVVVLIAISSSSAI---VAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCTCAAGAAGCTCCAGC
TCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAA
mRNA sequenceShow/hide mRNA sequence
GTTTAAGTGGTGGGGCTTAACACAGCTGTTTGGCAATACAAACCACCAAATCAAAACCAACCTGTAAAAAACCCTTCATTAATAATAATAATTCTATTTTTCCTTTTTTT
GCTATAAATACCAACACTTCCTTCTTCATTTCCCTTCAACAAATTCAAACAAATCAGAGGAACCCCATTTGAAAAAAATCCTCATATACATACCCAAACCCATTTTCAAG
GATTTTTTTCATCAATGGAAGCAGCAGCAAAGAGATTTCAAGGTCTAATGGTAACAATGATGGTGGTTGTTCTCATCGCTATTTCATCATCATCCGCCATTGTTGCAGCT
CAAGAAGCTCCAGCTCCAAGCCCAGCTTCTGATGCCTCTCTTTCTATTCCAACTTTAATGGCTTCTTTTGTTCCTCTTGTTTTTGGATTCTTTTTCATCTAATAATTCTT
CCCCCTAATTCCTTCTTCTTTTATTTCATTTTTAATTACCATTTATATCTTTTGTAATTTCCCTATGGATATATAAATGTGTGTGTGTGTATGTGTTTTTCTTTTTTCTT
TTTTCTTTTAGGGGATGGTGATTGAATTTGTTTGGGTGTGATTTGGGATTATTATTAATTTTATGTATATTTTTCCATATTAATTTAATGTTATGTTATGTTATTATTAA
TTTC
Protein sequenceShow/hide protein sequence
MEAAAKRFQGLMVTMMVVVLIAISSSSAIVAAQEAPAPSPASDASLSIPTLMASFVPLVFGFFFI