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CSPI01G29660 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G29660
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L30
Genome locationChr1:24072136..24073980
RNA-Seq ExpressionCSPI01G29660
SyntenyCSPI01G29660
Gene Ontology termsGO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000231 - Ribosomal protein L30e
IPR004038 - Ribosomal protein L7Ae/L30e/S12e/Gadd45
IPR022991 - Ribosomal protein L30e, conserved site
IPR029064 - 50S ribosomal protein L30e-like
IPR039109 - Ribosomal protein L30/YlxQ


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004251199.1 60S ribosomal protein L30 [Solanum lycopersicum]6.3e-5498.17Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

XP_008451087.1 PREDICTED: 60S ribosomal protein L30 [Cucumis melo]2.0e-5599.1Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_011660089.1 60S ribosomal protein L30 [Cucumis sativus]8.8e-56100Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

XP_022925483.1 60S ribosomal protein L30 [Cucurbita moschata]3.7e-5499.08Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

XP_038878626.1 60S ribosomal protein L30 [Benincasa hispida]2.8e-5499.08Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKSMP
Subjt:  DSDIIKSMP

TrEMBL top hitse value%identityAlignment
A0A0A0LXA9 Ribosomal_L7Ae domain-containing protein4.3e-56100Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A1S3BQS6 60S ribosomal protein L309.5e-5699.1Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A5D3CI16 60S ribosomal protein L309.5e-5699.1Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLR+SKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMPES
        DSDIIKSMPES
Subjt:  DSDIIKSMPES

A0A6J1EFB5 60S ribosomal protein L301.8e-5499.08Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

A0A6J1HXQ4 60S ribosomal protein L301.8e-5499.08Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

SwissProt top hitse value%identityAlignment
O49884 60S ribosomal protein L307.0e-5695.41Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLK+LRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKYYRVCCLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Q8VZ19 60S ribosomal protein L30-22.2e-4984.4Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9C8F7 Putative 60S ribosomal protein L30-13.4e-5086.24Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Q9LSA3 60S ribosomal protein L30-31.1e-4883.49Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP

Q9M5M6 60S ribosomal protein L305.6e-5391.74Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKKTHESIN+RLALVMKSGK+TLGYKTVL++LRS+KGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RVCCLSIID G
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

Arabidopsis top hitse value%identityAlignment
AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein2.4e-5186.24Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVAAKKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVHHYN +NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT1G77940.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein1.6e-5084.4Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MV  KKTKK+HE IN+RLALVMKSGKYTLGYK+VLK+LR SKGKLI+I+ NCPPLR+SEIEYYAMLAKVGVHHYNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIKS+P
Subjt:  DSDIIKSMP

AT3G18740.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein7.7e-5083.49Show/hide
Query:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG
        MVA KK KK+HE IN+RLALVMKSGKYTLGYK+VLK+LRSSKGKLI+I++NCPPLR+SEIEYYAMLAKVGVH YNG+NVDLGTACGKY+RV CLSI+DPG
Subjt:  MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPG

Query:  DSDIIKSMP
        DSDIIK++P
Subjt:  DSDIIKSMP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCCGCAAAGAAGACGAAGAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAGAC
CTTGAGGAGCTCTAAAGGTAAGCTGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATT
ACAACGGAAGCAATGTTGACCTTGGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAA
AGTTAG
mRNA sequenceShow/hide mRNA sequence
GCTAACCCTTTCGGTGCTCTATATATATTTTTCTGAATTAGGGTTTTTGGCCGTTCAGTTGGCGAGTACAGCTTCGAATCTTCAATCATGGTGGCCGCAAAGAAGACGAA
GAAGACCCATGAGAGCATCAACAACAGACTCGCTCTCGTCATGAAGAGTGGGAAATACACCTTGGGATACAAAACCGTCCTCAAGACCTTGAGGAGCTCTAAAGGTAAGC
TGATCATCATTGCCAACAACTGCCCTCCACTCCGAAAGTCCGAGATTGAATACTATGCAATGTTGGCCAAGGTTGGAGTTCACCATTACAACGGAAGCAATGTTGACCTT
GGAACCGCATGTGGCAAATACTACAGAGTATGCTGCCTCAGCATTATCGATCCCGGTGATTCGGATATTATCAAGAGCATGCCCGAAAGTTAGGTTGCAACTTCTTTTTA
AGATCATAGAATTTTGTTTCAGAGTTTCTTCTTGGTTTTGGGTTGAACGTAGTGATGTGTTTTTGCTTGTGAGGCATGATATTATTGAACAAATGGTTTCATTATAAACC
CTTTTTTATGTTCAAGATCATCTTATTCCAGAAAACTTCCGTATCGTTATCTTGGTGCCCTTTTAACAGTACAACCATGTTGCCTCCTCATATTTTTTGTTCTATTGTTA
TAATATTAGTGTCAATTTGACATGTTCTTATGTTGGGGCAAATTAATAAATTTTGAAGAGTGTTTCATGTGATCCTATGACTAATCCAAGGTTAGATTGAAAATGAGAAT
GTTAAATCTTCTCATAGATCAAATGTTGTGAGCCATGTCAC
Protein sequenceShow/hide protein sequence
MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKTLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGSNVDLGTACGKYYRVCCLSIIDPGDSDIIKSMPE
S