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CSPI01G30930 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G30930
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDDE Tnp4 domain-containing protein
Genome locationChr1:25431013..25432247
RNA-Seq ExpressionCSPI01G30930
SyntenyCSPI01G30930
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054070.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.4e-3854.41Show/hide
Query:  EYELDQLVKLECDDVVLHFVMHVCKEPCRTSSHTGYKFESQMYAFGGSSYNVSY------YTTGSRFSNRMVQERFQYSGETVSSQPRGMKEVFNHRHSS
        EYELDQLVKL C  VV HFVMHVCKEPC TSSHTGYKF  ++        +  +      +     FSNRMVQERFQ SG T     R   E     H  
Subjt:  EYELDQLVKLECDDVVLHFVMHVCKEPCRTSSHTGYKFESQMYAFGGSSYNVSY------YTTGSRFSNRMVQERFQYSGETVSSQPRGMKEVFNHRHSS

Query:  LRYTIE-----RTLGVWK-NRWKIA--RQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYEDVNEEHRGSVREMEMNEER
          +  +       LG ++  R+ +A  R+       K VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE+VNEEHRGSVREMEMNEER
Subjt:  LRYTIE-----RTLGVWK-NRWKIA--RQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYEDVNEEHRGSVREMEMNEER

Query:  DRIA
        DRIA
Subjt:  DRIA

RVX11459.1 L10-interacting MYB domain-containing protein [Vitis vinifera]8.4e-3057.72Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+        S P+G KE+FNHRHSSLR TIERT  V KNRW++ R+MHSFP +K VKIV+ASMALHNFIR++++ D EF+PYDD++ LLP N+E +  
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        D   E  GS    EM E+RDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

XP_008444998.1 PREDICTED: uncharacterized protein LOC103488168 isoform X1 [Cucumis melo]1.6e-4478.86Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+  +     SQPRGMKEVFNHRHSSLR TIERT  VWKNRW+I RQMHSFPFDK VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        +VNEEHRGSVREMEMNEERDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

XP_016902710.1 PREDICTED: uncharacterized protein LOC103488168 isoform X2 [Cucumis melo]1.6e-4478.86Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+  +     SQPRGMKEVFNHRHSSLR TIERT  VWKNRW+I RQMHSFPFDK VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        +VNEEHRGSVREMEMNEERDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

XP_016902727.1 PREDICTED: uncharacterized protein LOC103488168 isoform X3 [Cucumis melo]1.6e-4478.86Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+  +     SQPRGMKEVFNHRHSSLR TIERT  VWKNRW+I RQMHSFPFDK VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        +VNEEHRGSVREMEMNEERDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

TrEMBL top hitse value%identityAlignment
A0A1S3BCF0 uncharacterized protein LOC103488168 isoform X17.7e-4578.86Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+  +     SQPRGMKEVFNHRHSSLR TIERT  VWKNRW+I RQMHSFPFDK VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        +VNEEHRGSVREMEMNEERDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

A0A1S4E3C0 uncharacterized protein LOC103488168 isoform X37.7e-4578.86Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+  +     SQPRGMKEVFNHRHSSLR TIERT  VWKNRW+I RQMHSFPFDK VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        +VNEEHRGSVREMEMNEERDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

A0A1S4E406 uncharacterized protein LOC103488168 isoform X27.7e-4578.86Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+  +     SQPRGMKEVFNHRHSSLR TIERT  VWKNRW+I RQMHSFPFDK VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        +VNEEHRGSVREMEMNEERDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

A0A438JR82 L10-interacting MYB domain-containing protein4.1e-3057.72Show/hide
Query:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE
        ER+        S P+G KE+FNHRHSSLR TIERT  V KNRW++ R+MHSFP +K VKIV+ASMALHNFIR++++ D EF+PYDD++ LLP N+E +  
Subjt:  ERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYE

Query:  DVNEEHRGSVREMEMNEERDRIA
        D   E  GS    EM E+RDRIA
Subjt:  DVNEEHRGSVREMEMNEERDRIA

A0A5A7UFP3 Putative nuclease HARBI14.1e-3854.41Show/hide
Query:  EYELDQLVKLECDDVVLHFVMHVCKEPCRTSSHTGYKFESQMYAFGGSSYNVSY------YTTGSRFSNRMVQERFQYSGETVSSQPRGMKEVFNHRHSS
        EYELDQLVKL C  VV HFVMHVCKEPC TSSHTGYKF  ++        +  +      +     FSNRMVQERFQ SG T     R   E     H  
Subjt:  EYELDQLVKLECDDVVLHFVMHVCKEPCRTSSHTGYKFESQMYAFGGSSYNVSY------YTTGSRFSNRMVQERFQYSGETVSSQPRGMKEVFNHRHSS

Query:  LRYTIE-----RTLGVWK-NRWKIA--RQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYEDVNEEHRGSVREMEMNEER
          +  +       LG ++  R+ +A  R+       K VKIVVASM LHNFIRV SKTD EF+PYD     +PSNDEINYE+VNEEHRGSVREMEMNEER
Subjt:  LRYTIE-----RTLGVWK-NRWKIA--RQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYEDVNEEHRGSVREMEMNEER

Query:  DRIA
        DRIA
Subjt:  DRIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)4.8e-0730.53Show/hide
Query:  PRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKT---DFEFQPYDDNEMLLPSNDEINYEDVNEE
        P    E+FN RH SLR  IER  G++K+R+ I +    F + K   +V+   ALHNF+R   ++   DF  +  ++ +++    + +N  +++ E
Subjt:  PRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKT---DFEFQPYDDNEMLLPSNDEINYEDVNEE

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.0e-0932.54Show/hide
Query:  YSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSND------EIN
        Y G + +S+    KE+FN RH  L   I RT G  K R+ I      +P    VK+V+A+ ALHN++R+    D  F+ +++  +     D      E  
Subjt:  YSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKNRWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSND------EIN

Query:  YEDVNEEHRGSVREMEMN-EERDRIA
         E V +EH     E+E +   RD IA
Subjt:  YEDVNEEHRGSVREMEMN-EERDRIA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAATATGAACTCGATCAATTAGTGAAATTGGAATGTGATGATGTGGTGCTTCATTTTGTGATGCATGTTTGCAAAGAGCCTTGTAGGACATCTTCTCACACTGG
TTACAAATTTGAAAGCCAAATGTATGCCTTTGGAGGAAGCTCTTACAATGTTTCTTATTACACAACTGGGTCACGTTTCTCAAATAGAATGGTTCAAGAAAGATTTCAGT
ACTCAGGGGAGACTGTATCAAGCCAACCAAGAGGCATGAAGGAGGTATTTAATCATAGACATTCTTCCTTAAGATACACAATTGAAAGAACACTTGGTGTTTGGAAGAAT
AGATGGAAAATTGCTCGGCAAATGCATAGTTTTCCATTTGACAAACATGTAAAAATTGTTGTTGCTTCAATGGCTCTTCATAACTTTATAAGGGTTCATTCAAAAACAGA
TTTTGAGTTCCAGCCTTATGATGACAACGAGATGCTACTACCTTCAAATGATGAAATAAATTATGAGGACGTCAATGAAGAGCATAGAGGTTCAGTTCGTGAGATGGAAA
TGAATGAAGAACGCGATCGAATTGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAATATGAACTCGATCAATTAGTGAAATTGGAATGTGATGATGTGGTGCTTCATTTTGTGATGCATGTTTGCAAAGAGCCTTGTAGGACATCTTCTCACACTGG
TTACAAATTTGAAAGCCAAATGTATGCCTTTGGAGGAAGCTCTTACAATGTTTCTTATTACACAACTGGGTCACGTTTCTCAAATAGAATGGTTCAAGAAAGATTTCAGT
ACTCAGGGGAGACTGTATCAAGCCAACCAAGAGGCATGAAGGAGGTATTTAATCATAGACATTCTTCCTTAAGATACACAATTGAAAGAACACTTGGTGTTTGGAAGAAT
AGATGGAAAATTGCTCGGCAAATGCATAGTTTTCCATTTGACAAACATGTAAAAATTGTTGTTGCTTCAATGGCTCTTCATAACTTTATAAGGGTTCATTCAAAAACAGA
TTTTGAGTTCCAGCCTTATGATGACAACGAGATGCTACTACCTTCAAATGATGAAATAAATTATGAGGACGTCAATGAAGAGCATAGAGGTTCAGTTCGTGAGATGGAAA
TGAATGAAGAACGCGATCGAATTGCATAG
Protein sequenceShow/hide protein sequence
MFEYELDQLVKLECDDVVLHFVMHVCKEPCRTSSHTGYKFESQMYAFGGSSYNVSYYTTGSRFSNRMVQERFQYSGETVSSQPRGMKEVFNHRHSSLRYTIERTLGVWKN
RWKIARQMHSFPFDKHVKIVVASMALHNFIRVHSKTDFEFQPYDDNEMLLPSNDEINYEDVNEEHRGSVREMEMNEERDRIA