; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI01G30960 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI01G30960
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationChr1:25477950..25480663
RNA-Seq ExpressionCSPI01G30960
SyntenyCSPI01G30960
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056003.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]1.6e-16398.05Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGGGGD+GGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
        AKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP MSNLHLGDGGSTSSPVIDP+DVYGSS TRGGGLAGGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

KAG6588219.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]1.6e-13683.65Show/hide
Query:  MWPSS---RPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDD---GGGGIQFNGNNLDGFGILGGGSSLNSGVG
        MWPSS   RP+   Y HT  P  DMVGLMASG+GVG+SVLPLL+GLAPSSVGIEE NLMISRGGGG D   GGGG+QF+GNN DGFG LGGGSSLNSGVG
Subjt:  MWPSS---RPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDD---GGGGIQFNGNNLDGFGILGGGSSLNSGVG

Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA--GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASS
        TCHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA  GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  S
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA--GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASS

Query:  AADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHL---GDGGSTSSPVIDPADVYGSS
        AADMS K+AKKLPEQ+RAPAVFKCVRVTAVEGG S GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPM+S+LHL   GDGGSTSSP+IDP+DVYGSS
Subjt:  AADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHL---GDGGSTSSPVIDPADVYGSS

Query:  TTRGGGLAGGSGYGNSIN
          RGGGLAGGSGYGN IN
Subjt:  TTRGGGLAGGSGYGNSIN

XP_008450344.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]1.6e-16398.05Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGGGGD+GGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
        AKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP MSNLHLGDGGSTSSPVIDP+DVYGSS TRGGGLAGGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

XP_011660164.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]2.0e-166100Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
        AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

XP_038878596.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]2.1e-15292.21Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGG-GDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDC
        MWPSSRPL IGY HT AP  DMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGGG G  GGGG+QFNGNNLDGFGILGGGSSLNSG GTCHDC
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGG-GDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDC

Query:  GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSK
        GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+ AASD AAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS K
Subjt:  GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSK

Query:  KAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGG
        KAKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQA+VKIGGH+FKGYLYDHGVEARDGFP +SNLHLGDGGSTSSPVIDPADVYGSS  RGG LAGG
Subjt:  KAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGG

Query:  SGYGNSIN
        SGYGN IN
Subjt:  SGYGNSIN

TrEMBL top hitse value%identityAlignment
A0A0A0M099 Transcription factor9.7e-167100Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
        AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

A0A1S3BQ17 protein LATERAL ROOT PRIMORDIUM 17.6e-16498.05Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGGGGD+GGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
        AKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP MSNLHLGDGGSTSSPVIDP+DVYGSS TRGGGLAGGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

A0A5A7UJ85 Protein LATERAL ROOT PRIMORDIUM 17.6e-16498.05Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGGGGD+GGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS
        AKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP MSNLHLGDGGSTSSPVIDP+DVYGSS TRGGGLAGGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

A0A6J1F4X3 protein LATERAL ROOT PRIMORDIUM 1-like isoform X11.5e-13583.12Show/hide
Query:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCH
        MWP   S+RP+   Y HT  P  DMVGLMASG+GVG+SVLPLL+GLAPSSVGIEE NLMISRGG G  GGGG+QF+GNN DGFG LGGGSSLNSGVGTCH
Subjt:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCH

Query:  DCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM
        DCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAADM
Subjt:  DCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM

Query:  SSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHL---GDGGSTSSPVIDPADVYGSSTTRG
        S K+AKKLPEQ+RAPAVFKCVRVTAVEGG + GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPM+S+LHL   GDGGSTSSP+IDP+DVYGSS  RG
Subjt:  SSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHL---GDGGSTSSPVIDPADVYGSSTTRG

Query:  GGLAGGSGYGNSIN
        GGLAG SGYGN IN
Subjt:  GGLAGGSGYGNSIN

A0A6J1ID91 protein LATERAL ROOT PRIMORDIUM 1-like isoform X18.0e-13783.86Show/hide
Query:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGD--DGGGGIQFNGNNLDGFGILGGGSSLNSGVGT
        MWP   SSRP+   Y HT  P  DMVGLMASG+GVG+SVLPLL+G+APSSVGIEE NLMISRGGGGD   GGGG+QF+GNN DGFG LGGGSSLNSGVGT
Subjt:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGD--DGGGGIQFNGNNLDGFGILGGGSSLNSGVGT

Query:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        CHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAA
Subjt:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHL---GDGGSTSSPVIDPADVYGSSTT
        DMS K+AKKLPEQ+RAPAVFKCVRVTAVEGG S GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFPM+S+LHL   GDGGSTSSP+IDP+DVYGSS  
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHL---GDGGSTSSPVIDPADVYGSSTT

Query:  RGGGLAGGSGYGNSIN
        RGGGLAGGSGYGN IN
Subjt:  RGGGLAGGSGYGNSIN

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 24.3e-3142.79Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +  GG S    +GG    +           ++S++  PS  A    
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGG
          +S      P ++ + A+F+CV+++ V+    GG  +YAYQ  V IGGH+FKG LYD G       P  S +  G GGS         D   SS   GG
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGG

Query:  G
        G
Subjt:  G

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.5e-5548.99Show/hide
Query:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLL+   P    +E++++         +    +     + F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY
        FKCVRVTAVE     G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP MS+LHLG      +G S S+P++DP + VYG     GGG +GG  Y
Subjt:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY

Q9LQZ5 Protein SHI RELATED SEQUENCE 53.4e-2841.29Show/hide
Query:  GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSH------
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER  +   +       SS  T   K+ R  +     +        
Subjt:  GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSH------

Query:  -TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTS
         ++ +NT   + +++S  ++S    + LP ++ +PA+F+CVRV+++E         YAYQ  V IGGH+FKG LYD G E +D      N HL    ST+
Subjt:  -TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTS

Query:  S
        +
Subjt:  S

Q9SD40 Protein SHI RELATED SEQUENCE 16.3e-3039.65Show/hide
Query:  ILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTS
        I  GGS   SG  +C DCGNQAKKDCSH RCR+CCKSRGF+CSTHV+STWVPAA+RRERQ   A                  + +L   ++    H    
Subjt:  ILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTS

Query:  NTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPMMSNLHLGDGGSTSS
           + S   +     S  +    P ++ + AVF+CVRV++VE G      E+AYQ  V IGGH+FKG LYD G  +  G             G GG+   
Subjt:  NTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPMMSNLHLGDGGSTSS

Query:  PVIDPADV----YGSSTTRGGGLAGGS
         +I    V      SST   GG+   S
Subjt:  PVIDPADV----YGSSTTRGGGLAGGS

Q9XGX0 Protein SHORT INTERNODES5.3e-2943.37Show/hide
Query:  SSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTP
        S   SG  +C DCGNQ+KKDCSH RCR+CCKSRG DC THVKSTWVPAA+RRERQ   +               GG  P+    +    S TS + T  P
Subjt:  SSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTP

Query:  SFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARD----GFPMMSNLHLGDGGSTSSP
        S + S        +    P ++ + AVF+CVRV++V+        EYAY+  V IGGHVFKG LYD G   R     G   ++ +  G   S+SSP
Subjt:  SFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARD----GFPMMSNLHLGDGGSTSSP

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related4.5e-3139.65Show/hide
Query:  ILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTS
        I  GGS   SG  +C DCGNQAKKDCSH RCR+CCKSRGF+CSTHV+STWVPAA+RRERQ   A                  + +L   ++    H    
Subjt:  ILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTS

Query:  NTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPMMSNLHLGDGGSTSS
           + S   +     S  +    P ++ + AVF+CVRV++VE G      E+AYQ  V IGGH+FKG LYD G  +  G             G GG+   
Subjt:  NTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPMMSNLHLGDGGSTSS

Query:  PVIDPADV----YGSSTTRGGGLAGGS
         +I    V      SST   GG+   S
Subjt:  PVIDPADV----YGSSTTRGGGLAGGS

AT4G36260.1 Lateral root primordium (LRP) protein-related3.1e-3242.79Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +  GG S    +GG    +           ++S++  PS  A    
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGG
          +S      P ++ + A+F+CV+++ V+    GG  +YAYQ  V IGGH+FKG LYD G       P  S +  G GGS         D   SS   GG
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGG

Query:  G
        G
Subjt:  G

AT5G12330.1 Lateral root primordium (LRP) protein-related1.1e-5648.99Show/hide
Query:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLL+   P    +E++++         +    +     + F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY
        FKCVRVTAVE     G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP MS+LHLG      +G S S+P++DP + VYG     GGG +GG  Y
Subjt:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY

AT5G12330.2 Lateral root primordium (LRP) protein-related1.1e-5648.99Show/hide
Query:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLL+   P    +E++++         +    +     + F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY
        FKCVRVTAVE     G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP MS+LHLG      +G S S+P++DP + VYG     GGG +GG  Y
Subjt:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY

AT5G12330.4 Lateral root primordium (LRP) protein-related1.1e-5648.99Show/hide
Query:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLL+   P    +E++++         +    +     + F   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLSGLAPSSVGIEEANLMIS------RGGGGDDGGGGIQFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY
        FKCVRVTAVE     G +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP MS+LHLG      +G S S+P++DP + VYG     GGG +GG  Y
Subjt:  FKCVRVTAVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLG------DGGSTSSPVIDPAD-VYGSSTTRGGGLAGGSGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCCTCATCCAGACCCCTCACCATCGGTTATAACCACACGCCGGCGCCGACGCCGGACATGGTGGGTCTCATGGCCTCAGGCTTCGGAGTTGGCGTTAGCGTTTT
GCCTCTGCTTTCGGGCCTCGCGCCGTCAAGTGTAGGAATTGAAGAAGCTAATTTAATGATCAGCCGTGGTGGTGGCGGCGACGACGGTGGCGGCGGAATTCAATTCAATG
GGAATAATTTAGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGTTTGAATTCCGGGGTCGGAACTTGCCATGATTGTGGGAACCAAGCCAAGAAAGATTGTAGTCACCGG
CGGTGCAGGAGCTGCTGTAAAAGCCGTGGGTTTGATTGTTCAACTCACGTGAAAAGCACGTGGGTGCCAGCAGCTCGAAGGAGAGAACGTCAGATGATGGGCGCAGCGTC
GGATGCAGCGGCCGGTGGGACCTCGTCGGGGTCTACGTCCGGCGGGAAGAAGCCGAGGTTGATTGCTTCACAGACGACTACTAATTCTCATACTTCCACTTCAAATACTC
CAACACCAAGCTTTGACGCTTCCTCAGCCGCTGATATGAGTAGTAAAAAGGCAAAAAAGCTGCCGGAACAAATCCGAGCGCCTGCGGTGTTCAAATGCGTGCGGGTAACA
GCAGTGGAGGGTGGCACTAGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTTAAAGGTTATTTGTACGACCATGGAGTAGAAGC
TAGAGATGGGTTTCCGATGATGTCGAATTTGCATCTTGGAGATGGCGGTTCAACTTCGTCACCGGTCATTGATCCTGCTGATGTTTACGGCAGCTCCACCACCCGCGGTG
GGGGACTGGCTGGAGGCTCCGGCTATGGTAATTCCATAAATTGA
mRNA sequenceShow/hide mRNA sequence
GATACTCTGAAAACTACAAAACCACTTTTTAGTGTTTCTTGAAATTCATTCACAAACCAAAATTCATCCTTTCTCTCAATTCTCCTTCTCTGCAAATTTCCAAATAAATA
ACATTTCATAGATCCATGTTGCTTCATCAGTAAACCTTAGATCAAATTTAGATTATTTTTATAGAAAAATTAATTTAGGGTTTTTGTTCCTCTCCGCCGGAGATTCACCA
GCTGTGGCTGCCGCACGCCGTCTTCCTTCCGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCATCGTCGCCGATGAACTCTCCCTCGGTTTCAATTCCGC
CTCCACCATTCCACCACCTCGGATGTGGCCCTCATCCAGACCCCTCACCATCGGTTATAACCACACGCCGGCGCCGACGCCGGACATGGTGGGTCTCATGGCCTCAGGCT
TCGGAGTTGGCGTTAGCGTTTTGCCTCTGCTTTCGGGCCTCGCGCCGTCAAGTGTAGGAATTGAAGAAGCTAATTTAATGATCAGCCGTGGTGGTGGCGGCGACGACGGT
GGCGGCGGAATTCAATTCAATGGGAATAATTTAGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGTTTGAATTCCGGGGTCGGAACTTGCCATGATTGTGGGAACCAAGC
CAAGAAAGATTGTAGTCACCGGCGGTGCAGGAGCTGCTGTAAAAGCCGTGGGTTTGATTGTTCAACTCACGTGAAAAGCACGTGGGTGCCAGCAGCTCGAAGGAGAGAAC
GTCAGATGATGGGCGCAGCGTCGGATGCAGCGGCCGGTGGGACCTCGTCGGGGTCTACGTCCGGCGGGAAGAAGCCGAGGTTGATTGCTTCACAGACGACTACTAATTCT
CATACTTCCACTTCAAATACTCCAACACCAAGCTTTGACGCTTCCTCAGCCGCTGATATGAGTAGTAAAAAGGCAAAAAAGCTGCCGGAACAAATCCGAGCGCCTGCGGT
GTTCAAATGCGTGCGGGTAACAGCAGTGGAGGGTGGCACTAGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTTAAAGGTTATT
TGTACGACCATGGAGTAGAAGCTAGAGATGGGTTTCCGATGATGTCGAATTTGCATCTTGGAGATGGCGGTTCAACTTCGTCACCGGTCATTGATCCTGCTGATGTTTAC
GGCAGCTCCACCACCCGCGGTGGGGGACTGGCTGGAGGCTCCGGCTATGGTAATTCCATAAATTGATCCATATTGTTTAAACATTTTAATTTCAATGCTGGGTTTATAGC
TTTTGAATTTGTTTAGTGGAAAAATAAGGGATAGGAAGAGGAGCCCTTACTTTATGCATGCTTTACTTTTATTTGTATATTTATATTGCTTACAAATATAAATATATTCT
ATTAATATTTCATTTTGAAGGATTAAAGTAAATTTATTTTAGTTTTAAA
Protein sequenceShow/hide protein sequence
MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLSGLAPSSVGIEEANLMISRGGGGDDGGGGIQFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHR
RCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVT
AVEGGTSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPMMSNLHLGDGGSTSSPVIDPADVYGSSTTRGGGLAGGSGYGNSIN