CuGenDBv2

Gene ID	CSPI01G31090
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	pentatricopeptide repeat-containing protein At1g62350
Genome location	Chr1:25630937..25631500
RNA-Seq Expression	CSPI01G31090
Synteny	CSPI01G31090
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR011990 - Tetratricopeptide-like helical domain superfamily IPR044795 - Pentatricopeptide repeat-containing protein THA8L-like

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0055976.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]

9.3e-69

96.62

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRLAPNLLRKISSSP+SSTPFHRFSLSTFLNLDLLQQQLLLRFI GSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKVCPHLLALLLSLFPFMTYVEFSALLSDMRS
        VAVLVELQRQNHVFLCMKVCPH LALLLSLFPFM +VEFSALLSDMRS
Subjt:  VAVLVELQRQNHVFLCMKVCPHLLALLLSLFPFMTYVEFSALLSDMRS

XP_004139064.1 pentatricopeptide repeat-containing protein At1g62350 isoform X1 [Cucumis sativus]

2.2e-54

99.16

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVLVELQRQNHVFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

XP_008450338.1 PREDICTED: pentatricopeptide repeat-containing protein At1g62350 [Cucumis melo]

1.1e-53

97.48

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRLAPNLLRKISSSP+SSTPFHRFSLSTFLNLDLLQQQLLLRFI GSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVLVELQRQNHVFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

XP_022966084.1 pentatricopeptide repeat-containing protein At1g62350 [Cucurbita maxima]

1.4e-40

81.51

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLR APNLLR+IS+S  S+   +RF+  TF      QQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVLVELQRQN VFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

XP_038878451.1 pentatricopeptide repeat-containing protein At1g62350 [Benincasa hispida]

7.6e-47

89.08

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRL  NLLR+IS+S  S+TPFHRFSL TFLN DL QQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVL ELQRQN VFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXS9 Uncharacterized protein

1.1e-54

100

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMK
        VAVLVELQRQNHVFLCMK
Subjt:  VAVLVELQRQNHVFLCMK

A0A1S3BQ11 pentatricopeptide repeat-containing protein At1g62350

5.3e-54

97.48

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRLAPNLLRKISSSP+SSTPFHRFSLSTFLNLDLLQQQLLLRFI GSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVLVELQRQNHVFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

A0A5D3DWI7 Pentatricopeptide repeat-containing protein

4.5e-69

96.62

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLRLAPNLLRKISSSP+SSTPFHRFSLSTFLNLDLLQQQLLLRFI GSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKVCPHLLALLLSLFPFMTYVEFSALLSDMRS
        VAVLVELQRQNHVFLCMKVCPH LALLLSLFPFM +VEFSALLSDMRS
Subjt:  VAVLVELQRQNHVFLCMKVCPHLLALLLSLFPFMTYVEFSALLSDMRS

A0A6J1EQI1 pentatricopeptide repeat-containing protein At1g62350

2.2e-39

78.99

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLR APNLLR+ S+S  S+   +R +  TF      QQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKR+QSN IRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVLVELQRQN VFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

A0A6J1HQL7 pentatricopeptide repeat-containing protein At1g62350

6.8e-41

81.51

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Query:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL
        MLR APNLLR+IS+S  S+   +RF+  TF      QQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSN IRLDRFISSHVSRLLKSDL
Subjt:  MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDL

Query:  VAVLVELQRQNHVFLCMKV
        VAVLVELQRQN VFLCMK+
Subjt:  VAVLVELQRQNHVFLCMKV

SwissProt top hits

e value

%identity

Alignment

Q1PFH7 Pentatricopeptide repeat-containing protein At1g62350

2.5e-16

77.19

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Query:  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV
        M KEGLI  KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQN VFLCMK+
Subjt:  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV

Q9STF9 Protein THYLAKOID ASSEMBLY 8-like, chloroplastic

1.3e-09

46.75

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Query:  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV
        RF  G    P   +WR KK +GKE L V+  LKRL+ +  +LD+FI +HV RLLK D++AV+ EL+RQ    L +K+
Subjt:  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV

Arabidopsis top hits

e value

%identity

Alignment

AT1G62350.1 Pentatricopeptide repeat (PPR) superfamily protein

1.8e-17

77.19

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Query:  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV
        M KEGLI  KELKRLQ+  +RLDRFI SHVSRLLKSDLV+VL E QRQN VFLCMK+
Subjt:  MGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV

AT3G42570.1 peroxidase family protein

4.8e-07

73.53

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Query:  KKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVS
        KKE  KEGLI  KELKRLQ+N +RLDRFI SH S
Subjt:  KKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVS

AT3G46870.1 Pentatricopeptide repeat (PPR) superfamily protein

9.4e-11

46.75

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Query:  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV
        RF  G    P   +WR KK +GKE L V+  LKRL+ +  +LD+FI +HV RLLK D++AV+ EL+RQ    L +K+
Subjt:  RFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQNHVFLCMKV

Sequences

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CDS sequence

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ATGCTTCGTCTTGCTCCAAATCTTCTTCGCAAAATCTCAAGCAGCCCCATTTCCTCAACCCCTTTCCATCGTTTTTCCCTTTCCACATTTCTCAACCTCGATCTGTTACA
GCAACAATTGCTGTTACGCTTCATCACTGGCTCTGCTTCCAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTAGTCAAAGAAC
TCAAGAGACTTCAGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGACCTTGTTGCGGTTCTTGTTGAGCTTCAGAGACAG
AATCATGTCTTTCTCTGCATGAAGGTATGCCCTCATTTACTCGCTTTATTATTATCTCTCTTCCCCTTTATGACATATGTTGAATTTTCAGCTCTGTTAAGCGACATGAG
AAGTTAA

mRNA sequence

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CACTTTCACAAACTGCACAAACCCCGCCCAATTCTCTTGCGTTTCGAGAAGAGAGAAACTTCGGTCCTGTATTGCTTCAAGGTTCCTCCATAATTTTGATGCTTCGTCTT
GCTCCAAATCTTCTTCGCAAAATCTCAAGCAGCCCCATTTCCTCAACCCCTTTCCATCGTTTTTCCCTTTCCACATTTCTCAACCTCGATCTGTTACAGCAACAATTGCT
GTTACGCTTCATCACTGGCTCTGCTTCCAGCCCTAGCCTCTCAATATGGAGGAGGAAGAAGGAGATGGGCAAGGAGGGTCTGATTGTAGTCAAAGAACTCAAGAGACTTC
AGTCCAATTTCATTCGCCTCGACCGCTTCATTTCCTCCCATGTCTCTCGCTTGCTCAAGTCCGACCTTGTTGCGGTTCTTGTTGAGCTTCAGAGACAGAATCATGTCTTT
CTCTGCATGAAGGTATGCCCTCATTTACTCGCTTTATTATTATCTCTCTTCCCCTTTATGACATATGTTGAATTTTCAGCTCTGTTAAGCGACATGAGAAGTTAATTAGT
TTCTTGCTAATGTA

Protein sequence

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MLRLAPNLLRKISSSPISSTPFHRFSLSTFLNLDLLQQQLLLRFITGSASSPSLSIWRRKKEMGKEGLIVVKELKRLQSNFIRLDRFISSHVSRLLKSDLVAVLVELQRQ
NHVFLCMKVCPHLLALLLSLFPFMTYVEFSALLSDMRS

CSPI01G31090 (gene) of Cucumber (PI 183967) v1 genome